Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_3753

Experiments: YNB Oleic Acid

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_3752: 12120 - HMMPfam-GDP-fucose protein O-fucosyltransferase-PF10250, at 503579 to 505478 12120 mRNA_3753: 12121 - K00728 POMT dolichyl-phosphate-mannose-protein mannosyltransferase, at 505655 to 508720 12121 mRNA_3754: 12122 - K01641 E2.3.3.10 hydroxymethylglutaryl-CoA synthase, at 509040 to 510998 12122

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Oleic Acid
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504,708 + 12120 mRNA_3752 0.59 -0.5
504,779 - 12120 mRNA_3752 0.63 -0.5
504,806 + 12120 mRNA_3752 0.65 -1.6
504,861 - 12120 mRNA_3752 0.67 -0.0
505,449 + 0.5
505,736 - -0.1
505,880 - -0.4
506,282 + 12121 mRNA_3753 0.20 1.2
506,299 - 12121 mRNA_3753 0.21 1.1
506,301 - 12121 mRNA_3753 0.21 0.5
506,745 + 12121 mRNA_3753 0.36 1.0
506,854 + 12121 mRNA_3753 0.39 1.1
506,858 - 12121 mRNA_3753 0.39 0.8
506,935 + 12121 mRNA_3753 0.42 0.1
507,015 - 12121 mRNA_3753 0.44 2.6
507,156 + 12121 mRNA_3753 0.49 0.8
507,171 + 12121 mRNA_3753 0.49 1.3
507,605 - 12121 mRNA_3753 0.64 -0.2
507,921 + 12121 mRNA_3753 0.74 0.9
508,037 - 12121 mRNA_3753 0.78 1.1
508,187 - 12121 mRNA_3753 0.83 0.7
508,197 + 12121 mRNA_3753 0.83 -2.3
508,205 + 12121 mRNA_3753 0.83 0.3
508,209 + 12121 mRNA_3753 0.83 -0.0
508,217 + 12121 mRNA_3753 0.84 2.0
508,334 + 12121 mRNA_3753 0.87 -0.4
508,337 - 12121 mRNA_3753 0.87 0.5
508,339 - 12121 mRNA_3753 0.88 0.7
508,352 + 12121 mRNA_3753 0.88 3.2
508,451 + -0.3
508,475 - 2.1
508,488 - 0.4
508,522 + -0.4
508,624 + 1.7
508,639 - 0.3
508,642 - 0.7
508,648 - 0.8
508,739 + 1.6
508,776 - -0.7
508,778 - -0.1
508,785 - 0.0
508,934 + 0.9
508,948 + 0.9
509,099 + 1.6