Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_3729

Experiments: YNB Oleic Acid

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_3728: 12096 - K11142 LAP3 cytosol aminopeptidase, at 441671 to 443858 12096 mRNA_3729: 12097 - K15280 SLC35C2 solute carrier family 35, member C2, at 444211 to 445530 12097

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Oleic Acid
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443,258 - 12096 mRNA_3728 0.73 0.4
443,310 - 12096 mRNA_3728 0.75 -0.9
443,441 + 12096 mRNA_3728 0.81 -0.6
443,572 - 12096 mRNA_3728 0.87 -0.1
443,750 - -0.9
443,791 - -1.0
443,836 - 1.3
443,837 - -0.2
443,853 + 0.6
443,880 - -1.5
443,885 + -0.7
443,898 - 0.4
443,903 - -1.3
443,903 - -0.1
443,905 + 0.4
443,911 + -1.2
443,919 + 0.5
443,920 + 0.1
443,932 - -0.2
443,933 - -0.1
443,961 + -0.7
443,962 - -1.9
443,966 - 0.7
443,973 + -0.5
444,026 - -0.3
444,032 - -0.0
444,053 - 1.1
444,055 + -0.5
444,070 + 1.8
444,081 - -0.4
444,149 + -0.4
444,158 + -1.3
444,177 + -0.1
444,186 + -0.3
444,200 + 1.1
444,218 + 0.3
444,331 + 0.6
444,620 - 12097 mRNA_3729 0.31 2.2
444,628 + 12097 mRNA_3729 0.32 2.1
445,205 - 12097 mRNA_3729 0.75 1.2
445,206 - 12097 mRNA_3729 0.75 0.5
445,238 + 12097 mRNA_3729 0.78 0.8
445,508 + 0.9
445,509 + 2.1
445,663 + -0.2
445,960 + -1.0
446,099 - 0.3
446,191 - 1.0
446,209 - 1.9
446,239 + 0.4
446,395 + -0.1
446,398 - 1.5
446,401 - 0.2
446,525 - -0.2
446,530 + -1.0