Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_3618

Experiments: YNB Oleic Acid

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_3617: 11985 - KOG0254 Predicted transporter (major facilitator superfamily), at 175125 to 177580 11985 mRNA_3618: 11986 - HMMPfam-Cupin domain-PF07883,SUPERFAMILY--SSF51182, at 178257 to 178945 11986 mRNA_3619: 11987 - HMMPfam-X-Pro dipeptidyl-peptidase (S15 family)-PF02129,HMMPfam-X-Pro dipeptidyl-peptidase C-terminal non-catalytic domain-PF08530,SMART-X-Pro dipeptidyl-peptidase C-terminal non-catalytic domain-SM00939,SUPERFAMILY--SSF49785,SUPERFAMILY--SSF53474,TIGRFAM-/NonD hydrolase CocE/NonD family protein-TIGR00976, at 179234 to 181455 11987

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Oleic Acid
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177,363 + -0.5
177,377 - 0.1
177,390 - 0.1
177,498 + 0.5
177,531 + -0.0
177,654 - -0.4
177,654 - -0.5
177,655 - 1.3
177,661 - -0.7
177,661 + -0.7
177,669 - 0.0
177,672 + -0.2
177,673 + 1.4
177,674 + 0.3
177,675 + 1.5
177,680 - -0.8
177,682 - 0.5
177,691 - 1.1
177,696 + -0.6
177,709 - 0.1
177,710 - -0.2
177,711 - -0.3
177,713 - 0.7
177,717 - -0.4
177,727 - 0.1
177,736 - -0.5
177,736 - -0.2
177,737 + 0.6
177,737 - 0.2
177,743 + -1.6
177,752 + -1.2
177,754 + -1.6
177,755 - -0.5
177,759 - -0.4
177,762 - -1.5
177,763 - 0.8
177,771 - 0.4
177,778 + 0.7
177,787 - 0.3
177,787 - -1.3
177,789 - 0.2
177,791 - -0.1
177,797 - -0.8
177,802 + 0.4
177,804 + -0.4
177,833 - 0.3
177,858 + 0.6
177,877 + 0.2
177,883 - -0.8
177,968 - -0.1
177,979 - 0.8
177,981 + -0.0
177,982 - 0.7
178,124 + -0.4
178,158 - -0.4
178,269 + 0.1
178,440 + 11986 mRNA_3618 0.27 -0.1
178,539 + 11986 mRNA_3618 0.41 -0.8
178,679 + 11986 mRNA_3618 0.61 -0.8
178,731 + 11986 mRNA_3618 0.69 -0.2
178,850 - 11986 mRNA_3618 0.86 -0.6
178,851 - 11986 mRNA_3618 0.86 0.5
178,856 + 11986 mRNA_3618 0.87 -0.9
179,128 - -0.4
179,134 + -0.5
179,163 - -1.0
179,193 - -1.1
179,197 + -0.0
179,201 + -2.1
179,324 - 0.2
179,662 - 11987 mRNA_3619 0.19 1.1