Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_3407

Experiments: YNB Oleic Acid

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_3406: 11774 - Hypothetical Protein, at 12464 to 13384 11774 mRNA_3407: 11775 - KOG0498 K+-channel ERG and related proteins, contain PAS/PAC sensor domain, at 13609 to 17494 11775 mRNA_3408: 11776 - K00012 UGDH, ugd UDPglucose 6-dehydrogenase, at 18200 to 20454 11776

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Oleic Acid
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12,648 + 11774 mRNA_3406 0.20 0.1
12,661 + 11774 mRNA_3406 0.21 -0.2
12,772 - 11774 mRNA_3406 0.33 0.2
12,778 + 11774 mRNA_3406 0.34 0.9
12,779 - 11774 mRNA_3406 0.34 0.4
12,799 + 11774 mRNA_3406 0.36 -0.1
12,803 - 11774 mRNA_3406 0.37 -0.2
12,805 - 11774 mRNA_3406 0.37 0.1
12,817 - 11774 mRNA_3406 0.38 0.0
12,821 + 11774 mRNA_3406 0.39 -0.6
12,821 - 11774 mRNA_3406 0.39 0.9
12,827 + 11774 mRNA_3406 0.39 -0.7
12,936 - 11774 mRNA_3406 0.51 0.3
12,936 - 11774 mRNA_3406 0.51 -0.3
12,949 + 11774 mRNA_3406 0.53 -1.2
12,957 + 11774 mRNA_3406 0.54 -1.4
12,964 - 11774 mRNA_3406 0.54 -2.7
12,964 + 11774 mRNA_3406 0.54 0.7
12,971 - 11774 mRNA_3406 0.55 0.9
12,973 - 11774 mRNA_3406 0.55 -0.4
12,976 - 11774 mRNA_3406 0.56 0.3
13,100 - 11774 mRNA_3406 0.69 0.8
13,114 - 11774 mRNA_3406 0.71 0.5
13,119 - 11774 mRNA_3406 0.71 -0.0
13,122 - 11774 mRNA_3406 0.71 -0.4
13,130 + 11774 mRNA_3406 0.72 -0.6
13,136 - 11774 mRNA_3406 0.73 -0.3
13,225 - 11774 mRNA_3406 0.83 0.9
13,242 - 11774 mRNA_3406 0.84 0.6
13,273 + 11774 mRNA_3406 0.88 -0.1
13,286 - 11774 mRNA_3406 0.89 -3.1
13,300 + -1.4
13,318 - -0.3
13,343 + -1.2
13,348 - -2.2
13,348 - 0.0
13,381 - -0.7
13,386 + -0.1
13,389 - 0.9
13,399 - -0.4
13,401 - -0.4
13,415 - 0.2
13,415 + -0.4
13,418 + -1.1
13,427 + -0.4
13,445 - 0.5
13,455 - -0.1
13,466 - -0.1
13,536 - 0.4
13,583 - -0.1
13,750 + -1.1
14,003 - 11775 mRNA_3407 0.10 -0.8
14,040 - 11775 mRNA_3407 0.11 -0.6
14,396 - 11775 mRNA_3407 0.20 -0.8
14,398 - 11775 mRNA_3407 0.20 -1.2
14,431 + 11775 mRNA_3407 0.21 -1.3
14,454 - 11775 mRNA_3407 0.22 -0.9
14,642 - 11775 mRNA_3407 0.27 -0.5
14,877 - 11775 mRNA_3407 0.33 -0.3
15,021 - 11775 mRNA_3407 0.36 -2.4
15,311 - 11775 mRNA_3407 0.44 1.2
15,728 - 11775 mRNA_3407 0.55 -2.1
15,743 + 11775 mRNA_3407 0.55 -0.3
15,913 - 11775 mRNA_3407 0.59 -2.1
15,923 - 11775 mRNA_3407 0.60 -0.6
16,447 - 11775 mRNA_3407 0.73 -2.6
17,077 + 11775 mRNA_3407 0.89 -0.9
17,661 - 0.2
17,687 + 0.0
17,824 + -0.3
17,911 - -0.1
17,919 - 1.0
17,920 - -1.2
17,937 + -0.6
17,938 - -0.5
17,964 - 0.3
17,987 - 0.3
18,054 - 0.5
18,069 + -0.2
18,097 - -0.0
18,099 + -0.7
18,109 - 0.1
18,119 - 0.3
18,121 - 1.0
18,123 - 1.7
18,126 + -0.5
18,127 - -1.1
18,128 + -1.8
18,131 - 0.1
18,267 - 3.0
18,271 - -1.4
18,398 + 2.7