Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_3320

Experiments: YNB Oleic Acid

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_3319: 11687 - KOG3854 SPRT-like metalloprotease, at 386428 to 389154 11687 mRNA_3320: 11688 - KOG2493 Na+/Pi symporter, at 389310 to 390792 11688 mRNA_3321: 11689 - Hypothetical Protein, at 391300 to 392689 11689

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Oleic Acid
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388,502 + 11687 mRNA_3319 0.76 -1.2
388,629 + 11687 mRNA_3319 0.81 0.8
388,632 + 11687 mRNA_3319 0.81 -1.1
388,638 + 11687 mRNA_3319 0.81 -0.0
388,790 + 11687 mRNA_3319 0.87 0.9
388,930 - 0.8
388,931 + 1.8
389,219 + 0.4
389,236 - 0.6
389,260 - 0.1
389,269 + -0.4
389,271 + -1.3
389,273 - -0.4
389,280 - 0.6
389,280 - -0.2
389,282 + 1.0
389,293 + -0.2
389,344 + 0.6
389,378 + 0.2
389,395 - 1.0
389,407 + -0.5
389,409 - 0.1
389,411 + -0.4
389,411 - -0.6
389,413 - 0.0
389,424 + 0.5
389,425 - 0.4
389,520 + 11688 mRNA_3320 0.14 -0.8
389,568 + 11688 mRNA_3320 0.17 0.1
389,612 + 11688 mRNA_3320 0.20 -1.0
389,684 + 11688 mRNA_3320 0.25 0.1
389,779 - 11688 mRNA_3320 0.32 0.6
389,864 + 11688 mRNA_3320 0.37 -0.5
390,296 + 11688 mRNA_3320 0.66 -1.0
390,299 - 11688 mRNA_3320 0.67 -1.3
390,434 - 11688 mRNA_3320 0.76 0.3
390,460 + 11688 mRNA_3320 0.78 -1.2
390,489 + 11688 mRNA_3320 0.80 -1.1
390,634 + 11688 mRNA_3320 0.89 -0.7
390,868 - 1.1
391,158 - -0.4
391,320 - 0.8
391,526 - 11689 mRNA_3321 0.16 1.4
391,668 - 11689 mRNA_3321 0.26 -0.1
391,789 + 11689 mRNA_3321 0.35 0.9