Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_3089

Experiments: YNB Oleic Acid

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_3088: 11456 - HMMPfam-Fungal Zn(2)-Cys(6) binuclear cluster domain-PF00172,ProSitePatterns-Zn(2)-C6 fungal-type DNA-binding domain signature.-PS00463,ProSiteProfiles-Zn(2)-C6 fungal-type DNA-binding domain profile.-PS50048,SMART-GAL4-like Zn(II)2Cys6 (or C6 zinc) binuclear cluster DNA-binding domain-SM00066,SUPERFAMILY--SSF57701, at 290812 to 293862 11456 mRNA_3089: 11457 - BLAST Rho GTPase-activating protein 30 [Larimichthys crocea], at 293855 to 294427 11457 mRNA_3090: 11458 - K03062 PSMC1, RPT2 26S proteasome regulatory subunit T2, at 294926 to 296826 11458

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Oleic Acid
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292,916 - 11456 mRNA_3088 0.69 -0.2
292,917 + 11456 mRNA_3088 0.69 -1.3
293,056 - 11456 mRNA_3088 0.74 -0.2
293,073 + 11456 mRNA_3088 0.74 -0.5
293,362 + 11456 mRNA_3088 0.84 -0.3
293,477 - 11456 mRNA_3088 0.87 -0.2
294,052 - 11457 mRNA_3089 0.34 1.5
294,064 - 11457 mRNA_3089 0.36 -1.1
294,079 + 11457 mRNA_3089 0.39 0.2
294,167 + 11457 mRNA_3089 0.54 0.2
294,209 - 11457 mRNA_3089 0.62 -0.9
294,360 - 11457 mRNA_3089 0.88 0.7
294,390 + 0.4
294,391 - -0.6
294,542 - 0.3
294,550 + -0.6
294,550 - -0.3
294,550 - 0.3
294,557 + 0.4
294,562 + -0.3
294,563 + 0.6
294,564 - -0.2
294,567 - 0.1
294,595 + 0.1
294,596 - -0.9
294,819 - -1.6
294,833 - 0.1
294,847 + 1.4
294,977 - 0.6
294,984 - -0.1
294,996 + -0.6
295,044 - 0.6
295,138 - 11458 mRNA_3090 0.11 0.3
295,338 - 11458 mRNA_3090 0.22 1.0