Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_3005

Experiments: YNB Oleic Acid

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_3004: 11372 - K12624 LSM5 U6 snRNA-associated Sm-like protein LSm5, at 53581 to 54123 11372 mRNA_3005: 11373 - K19708 PTC6, AUP1 protein phosphatase PTC6, at 54754 to 56074 11373 mRNA_3006: 11374 - K03259 EIF4E translation initiation factor 4E, at 56733 to 57511 11374

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Oleic Acid
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54,193 - -0.8
54,311 + -0.1
54,369 - -1.0
54,514 + -0.1
54,655 + 0.6
54,855 + -1.2
55,088 + 11373 mRNA_3005 0.25 -1.1
55,234 + 11373 mRNA_3005 0.36 -1.4
55,569 - 11373 mRNA_3005 0.62 -0.7
55,962 + -0.9
55,991 + -2.0
56,184 - 0.3
56,241 + 0.3
56,532 + -1.0
56,572 + 0.1
56,723 - -1.5
56,876 + 11374 mRNA_3006 0.18 -0.3
56,979 + 11374 mRNA_3006 0.32 -0.3