Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_2919

Experiments: YNB Oleic Acid

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_2918: 11286 - HMMPfam-Acetyltransferase (GNAT) domain-PF13523,SMART-Siderophore biosynthesis protein domain-SM01006,SUPERFAMILY--SSF55729, at 554033 to 555107 11286 mRNA_2919: 11287 - BLAST Protein FAM186A [Mus musculus] [Rhizoctonia solani], at 555842 to 558142 11287 mRNA_2920: 11288 - KOG2234 Predicted UDP-galactose transporter, at 558435 to 560436 11288

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Oleic Acid
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555,123 + -0.6
555,321 + -0.3
555,463 - 0.5
555,478 + 0.0
555,770 + 0.0
555,770 + 0.2
555,773 - 0.2
555,790 + -0.6
555,807 + -0.3
555,940 + 0.1
555,968 + -0.1
556,080 - 11287 mRNA_2919 0.10 -0.2
556,092 + 11287 mRNA_2919 0.11 -0.4
556,237 + 11287 mRNA_2919 0.17 -2.1
556,255 + 11287 mRNA_2919 0.18 0.6
556,255 + 11287 mRNA_2919 0.18 -0.4
556,273 - 11287 mRNA_2919 0.19 -0.8
556,572 + 11287 mRNA_2919 0.32 -1.2
556,580 + 11287 mRNA_2919 0.32 -0.6
556,975 + 11287 mRNA_2919 0.49 -2.0
557,134 - 11287 mRNA_2919 0.56 0.3
557,556 - 11287 mRNA_2919 0.74 0.1
558,003 + -0.6
558,148 + -1.5
558,196 + -0.3
558,299 + -0.3
558,475 - 0.3
558,871 - 11288 mRNA_2920 0.22 -0.4
558,898 + 11288 mRNA_2920 0.23 -1.6
558,977 - 11288 mRNA_2920 0.27 1.7
558,984 - 11288 mRNA_2920 0.27 -1.3
559,010 + 11288 mRNA_2920 0.29 0.4