Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_2534

Experiments: YNB Oleic Acid

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_2533: 10901 - K10706 SETX, ALS4 senataxin, at 377456 to 384141 10901 mRNA_2534: 10902 - HMMPfam-Nucleotide-diphospho-sugar transferase-PF03407, at 384523 to 387549 10902 mRNA_2535: 10903 - Hypothetical Protein, at 387572 to 388066 10903 mRNA_2536: 10904 - K15601 KDM3 lysine-specific demethylase 3, at 388426 to 391874 10904

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Oleic Acid
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383,639 - 0.6
383,775 + -0.2
383,796 + 0.2
384,097 - -0.5
384,218 - -1.3
384,234 - 0.5
384,238 + -0.1
384,340 - -0.6
384,379 - -0.5
384,383 - 1.1
384,392 + -0.4
384,441 + -2.0
384,530 - 0.3
384,549 + 0.4
384,865 - 10902 mRNA_2534 0.11 -0.3
385,004 + 10902 mRNA_2534 0.16 1.1
385,093 - 10902 mRNA_2534 0.19 -0.7
385,430 - 10902 mRNA_2534 0.30 1.2
385,434 + 10902 mRNA_2534 0.30 1.2
385,584 + 10902 mRNA_2534 0.35 1.0
385,692 - 10902 mRNA_2534 0.39 -0.4
385,719 + 10902 mRNA_2534 0.40 -0.6
385,746 + 10902 mRNA_2534 0.40 0.1
385,830 + 10902 mRNA_2534 0.43 0.2
385,880 - 10902 mRNA_2534 0.45 -1.0
386,036 + 10902 mRNA_2534 0.50 -0.2
386,115 - 10902 mRNA_2534 0.53 -0.5
386,304 + 10902 mRNA_2534 0.59 -0.1
386,311 + 10902 mRNA_2534 0.59 -0.2
386,339 + 10902 mRNA_2534 0.60 1.0
386,417 + 10902 mRNA_2534 0.63 0.1
386,440 - 10902 mRNA_2534 0.63 -0.2
386,729 + 10902 mRNA_2534 0.73 -0.8
386,780 - 10902 mRNA_2534 0.75 -0.6
386,987 - 10902 mRNA_2534 0.81 0.1
387,087 + 10902 mRNA_2534 0.85 0.1
387,088 + 10902 mRNA_2534 0.85 -0.1
387,153 + 10902 mRNA_2534 0.87 0.3
387,167 - 10902 mRNA_2534 0.87 1.3
387,171 - 10902 mRNA_2534 0.87 0.2
387,172 + 10902 mRNA_2534 0.88 0.5
387,174 + 10902 mRNA_2534 0.88 -0.2
387,200 - 10902 mRNA_2534 0.88 -0.0
387,462 + -0.1
387,470 - 0.0
387,479 + 0.1
387,484 + 1.0
387,492 - 0.1
387,608 + 0.3
387,611 - 0.4
387,615 + -0.3
387,623 - 10903 mRNA_2535 0.10 -0.4
387,628 + 10903 mRNA_2535 0.11 -0.4
387,630 - 10903 mRNA_2535 0.12 -0.7
387,637 + 10903 mRNA_2535 0.13 -0.7
387,637 - 10903 mRNA_2535 0.13 -1.1
387,638 - 10903 mRNA_2535 0.13 -1.0
387,639 + 10903 mRNA_2535 0.14 0.9
387,641 + 10903 mRNA_2535 0.14 0.3
387,641 - 10903 mRNA_2535 0.14 -0.7
387,642 - 10903 mRNA_2535 0.14 0.3
387,643 + 10903 mRNA_2535 0.14 -0.1
387,643 - 10903 mRNA_2535 0.14 0.4
387,644 + 10903 mRNA_2535 0.15 -0.4
387,644 + 10903 mRNA_2535 0.15 -0.4
387,644 + 10903 mRNA_2535 0.15 0.9
387,644 + 10903 mRNA_2535 0.15 0.3
387,648 + 10903 mRNA_2535 0.15 -0.6
387,649 - 10903 mRNA_2535 0.16 -1.0
387,650 - 10903 mRNA_2535 0.16 -0.1
387,652 + 10903 mRNA_2535 0.16 -0.4
387,656 + 10903 mRNA_2535 0.17 -1.6
387,658 - 10903 mRNA_2535 0.17 0.1
387,659 + 10903 mRNA_2535 0.18 0.9
387,665 - 10903 mRNA_2535 0.19 0.1
387,670 - 10903 mRNA_2535 0.20 1.0
387,671 - 10903 mRNA_2535 0.20 1.3
387,673 + 10903 mRNA_2535 0.20 -0.4
387,675 - 10903 mRNA_2535 0.21 2.5
387,677 - 10903 mRNA_2535 0.21 0.6
387,677 - 10903 mRNA_2535 0.21 -0.7
387,678 + 10903 mRNA_2535 0.21 -2.3
387,678 + 10903 mRNA_2535 0.21 -0.7
387,678 + 10903 mRNA_2535 0.21 1.2
387,684 - 10903 mRNA_2535 0.23 0.2
387,686 + 10903 mRNA_2535 0.23 -0.5
387,689 + 10903 mRNA_2535 0.24 -0.5
387,695 - 10903 mRNA_2535 0.25 -2.2
387,698 + 10903 mRNA_2535 0.25 0.1
387,698 - 10903 mRNA_2535 0.25 -0.1
387,719 + 10903 mRNA_2535 0.30 1.3
387,721 + 10903 mRNA_2535 0.30 1.6
387,733 + 10903 mRNA_2535 0.33 0.3
387,749 + 10903 mRNA_2535 0.36 -2.0
387,756 - 10903 mRNA_2535 0.37 -2.3
387,765 - 10903 mRNA_2535 0.39 0.2
387,783 - 10903 mRNA_2535 0.43 -1.3
387,792 + 10903 mRNA_2535 0.44 0.3
387,812 + 10903 mRNA_2535 0.48 0.3
387,819 - 10903 mRNA_2535 0.50 -1.5
387,829 - 10903 mRNA_2535 0.52 0.7
387,830 - 10903 mRNA_2535 0.52 0.2
387,832 + 10903 mRNA_2535 0.53 -0.4
387,839 + 10903 mRNA_2535 0.54 -0.7
387,846 + 10903 mRNA_2535 0.55 0.7
387,857 - 10903 mRNA_2535 0.58 0.4
387,857 - 10903 mRNA_2535 0.58 0.2
387,858 - 10903 mRNA_2535 0.58 0.3
387,873 + 10903 mRNA_2535 0.61 -0.1
387,874 - 10903 mRNA_2535 0.61 0.2
387,877 - 10903 mRNA_2535 0.62 1.0
387,880 + 10903 mRNA_2535 0.62 -0.3
387,881 + 10903 mRNA_2535 0.62 0.2
387,882 + 10903 mRNA_2535 0.63 -1.1
387,885 + 10903 mRNA_2535 0.63 -0.2
387,897 - 10903 mRNA_2535 0.66 -0.9
387,901 + 10903 mRNA_2535 0.66 -0.1
387,901 - 10903 mRNA_2535 0.66 0.7
387,902 + 10903 mRNA_2535 0.67 -0.0
387,915 + 10903 mRNA_2535 0.69 -0.4
387,945 + 10903 mRNA_2535 0.75 0.3
388,010 + 10903 mRNA_2535 0.88 -0.5
388,022 + -0.1
388,035 + -0.4
388,037 - 0.7
388,041 - -0.6
388,052 - -0.5
388,056 - -0.4
388,060 + -0.3
388,062 - -0.5
388,062 + -0.5
388,062 - 1.0
388,093 + -1.1
388,186 - -0.3
388,210 + 0.4
388,215 + -0.3
388,229 + 0.2
388,246 + -0.5
388,259 - 0.2
388,278 - 1.2
388,318 - 0.2
388,351 - -0.2
388,360 + 1.0
388,360 + 0.2
388,363 - 0.1
388,368 + 0.5
388,369 - -0.3