Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_2443

Experiments: YNB Oleic Acid

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_2442: 10810 - HMMPfam-ACT domain-PF13840,SUPERFAMILY--SSF55021, at 140857 to 142808 10810 mRNA_2443: 10811 - HMMPfam-Peroxidase-PF00141,PRINTS-Haem peroxidase superfamily signature-PR00458,PRINTS-Plant ascorbate peroxidase signature-PR00459,ProSitePatterns-Peroxidases proximal heme-ligand signature.-PS00435,ProSitePatterns-Peroxidases active site signature.-PS00436,ProSiteProfiles-Plant heme peroxidase family profile.-PS50873,SUPERFAMILY--SSF48113, at 143347 to 145508 10811 mRNA_2444: 10812 - KOG4505 Na+/H+ antiporter, at 145860 to 150269 10812

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Oleic Acid
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142,425 - 10810 mRNA_2442 0.80 -1.4
142,500 + 10810 mRNA_2442 0.84 -0.3
142,504 - 10810 mRNA_2442 0.84 -0.3
142,670 - -0.8
142,680 + -1.5
142,802 - -0.7
142,810 - 0.5
142,819 + -0.1
142,825 + 0.0
142,832 + -0.8
142,847 + -0.1
142,926 + 0.9
143,001 - 0.2
143,140 - -0.3
143,140 + -1.1
143,140 - 0.3
143,140 - -1.0
143,144 - -1.0
143,146 + 0.6
143,147 + -0.1
143,150 + 1.0
143,151 - -0.7
143,164 - -0.6
143,167 + -0.4
143,266 + 0.3
143,279 + -0.1
143,284 - -0.9
143,294 + -0.2
143,299 - 0.2
143,302 + 0.7
143,413 - -1.1
143,440 + -0.5
143,578 + 10811 mRNA_2443 0.11 -2.0
143,578 + 10811 mRNA_2443 0.11 -1.5
143,597 - 10811 mRNA_2443 0.12 0.6
143,755 - 10811 mRNA_2443 0.19 -2.3
143,762 + 10811 mRNA_2443 0.19 -0.9
143,902 - 10811 mRNA_2443 0.26 -2.0
144,161 - 10811 mRNA_2443 0.38 -1.2
144,322 - 10811 mRNA_2443 0.45 -2.1
144,326 - 10811 mRNA_2443 0.45 -0.6
144,622 - 10811 mRNA_2443 0.59 -1.5
145,043 - 10811 mRNA_2443 0.78 -1.0
145,046 + 10811 mRNA_2443 0.79 -1.1
145,602 - -2.3
145,618 - 0.3
145,621 - -0.6
145,623 + 0.2
145,625 - 0.5
145,625 + -0.3
145,637 - 0.2
145,639 - 0.4
145,643 - -2.2
145,652 + -0.3
145,658 - -0.2
145,669 - -1.7
145,671 - 0.6
145,678 + 0.0
145,704 + 0.8
145,792 + -0.0
145,800 - -1.6
145,821 + -0.4
145,949 + -0.5
146,110 + -0.6
146,252 - 0.6