Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_2421

Experiments: YNB Oleic Acid

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_2420: 10788 - KOG2618 Uncharacterized conserved protein, at 80430 to 82352 10788 mRNA_2421: 10789 - K11800 WDR22, BCRP2 WD repeat-containing protein 22, at 82479 to 84495 10789 mRNA_2422: 10790 - KOG2342 Uncharacterized conserved protein, at 84636 to 85865 10790

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Oleic Acid
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81,484 - 10788 mRNA_2420 0.55 3.0
81,764 + 10788 mRNA_2420 0.69 0.2
82,499 - -0.6
82,566 - 0.3
83,061 - 10789 mRNA_2421 0.29 2.1
83,246 + 10789 mRNA_2421 0.38 -1.4
83,395 + 10789 mRNA_2421 0.45 0.6
83,542 - 10789 mRNA_2421 0.53 0.6
83,695 + 10789 mRNA_2421 0.60 -0.5
84,122 - 10789 mRNA_2421 0.81 -0.1
84,122 - 10789 mRNA_2421 0.81 -1.2
84,129 + 10789 mRNA_2421 0.82 -0.3
84,129 + 10789 mRNA_2421 0.82 1.9
84,375 - -0.6
84,376 - -1.2
84,835 + 10790 mRNA_2422 0.16 -1.3
84,838 - 10790 mRNA_2422 0.16 0.1
84,839 + 10790 mRNA_2422 0.17 0.1
84,848 - 10790 mRNA_2422 0.17 1.0
84,872 - 10790 mRNA_2422 0.19 -0.9
84,894 - 10790 mRNA_2422 0.21 -0.5
85,177 - 10790 mRNA_2422 0.44 -0.4
85,193 + 10790 mRNA_2422 0.45 -0.2
85,195 - 10790 mRNA_2422 0.45 -2.2