Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_2412

Experiments: YNB Oleic Acid

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_2411: 10779 - HMMPfam-F-box-like-PF12937,SUPERFAMILY--SSF81383, at 60970 to 61863 10779 mRNA_2412: 10780 - K04378 SRF serum response factor, at 62318 to 64458 10780 mRNA_2413: 10781 - K13108 SNIP1 smad nuclear-interacting protein 1, at 64935 to 66206 10781

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Oleic Acid
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61,418 - 10779 mRNA_2411 0.50 0.4
61,458 + 10779 mRNA_2411 0.55 -0.8
61,481 + 10779 mRNA_2411 0.57 0.6
61,589 + 10779 mRNA_2411 0.69 0.2
61,667 + 10779 mRNA_2411 0.78 -0.5
61,759 - 10779 mRNA_2411 0.88 -0.8
61,768 - 10779 mRNA_2411 0.89 0.9
61,836 + -0.8
61,903 - -0.4
62,050 - 0.6
62,113 + -0.8
62,200 - -1.5
62,777 + 10780 mRNA_2412 0.21 -0.5
62,808 + 10780 mRNA_2412 0.23 -0.3
63,079 - 10780 mRNA_2412 0.36 1.3
63,583 - 10780 mRNA_2412 0.59 -0.8
63,747 - 10780 mRNA_2412 0.67 -0.7
63,791 - 10780 mRNA_2412 0.69 1.7
63,835 + 10780 mRNA_2412 0.71 -0.3
63,989 - 10780 mRNA_2412 0.78 -1.3
64,275 + -0.9
64,299 - -0.4
64,712 + -1.0
64,722 - -1.8
64,768 - -1.3
64,880 + -0.5
64,899 - 0.4
64,899 + 0.8
64,900 + 0.2
64,902 - 1.3
64,902 + -0.8
64,913 + -0.2
64,928 + -0.2