Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_2394

Experiments: YNB Oleic Acid

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_2393: 10761 - HMMPfam-Prolyl oligopeptidase family-PF00326,HMMPfam-alpha/beta hydrolase fold-PF07859,SUPERFAMILY--SSF53474, at 13442 to 14834 10761 mRNA_2394: 10762 - K03648 UNG, UDG uracil-DNA glycosylase, at 15133 to 16619 10762 mRNA_2395: 10763 - SMART-catalytic domain of ctd-like phosphatases-SM00577, at 16868 to 18999 10763

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Oleic Acid
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14,180 + 10761 mRNA_2393 0.53 0.0
14,223 - 10761 mRNA_2393 0.56 -0.5
14,225 + 10761 mRNA_2393 0.56 -0.6
14,240 + 10761 mRNA_2393 0.57 -0.4
14,312 + 10761 mRNA_2393 0.62 -0.4
14,356 - 10761 mRNA_2393 0.66 -0.8
14,379 + 10761 mRNA_2393 0.67 -0.9
14,419 + 10761 mRNA_2393 0.70 -0.7
14,474 + 10761 mRNA_2393 0.74 -0.2
14,501 - 10761 mRNA_2393 0.76 -0.6
14,544 + 10761 mRNA_2393 0.79 -0.7
14,635 - 10761 mRNA_2393 0.86 -0.8
14,764 - -2.5
14,793 - 0.8
14,960 + -0.5
15,084 - 0.2
15,256 + 0.1
15,266 - -0.8
15,407 + 10762 mRNA_2394 0.18 -0.3
15,413 + 10762 mRNA_2394 0.19 0.3
15,430 - 10762 mRNA_2394 0.20 -0.8
15,658 + 10762 mRNA_2394 0.35 -0.7
15,669 + 10762 mRNA_2394 0.36 -0.4
15,700 - 10762 mRNA_2394 0.38 -0.1
15,702 - 10762 mRNA_2394 0.38 0.1
15,704 + 10762 mRNA_2394 0.38 -0.8
15,709 + 10762 mRNA_2394 0.39 1.2
16,094 + 10762 mRNA_2394 0.65 -0.9
16,110 - 10762 mRNA_2394 0.66 0.1
16,264 + 10762 mRNA_2394 0.76 0.0
16,274 - 10762 mRNA_2394 0.77 -0.7
16,317 + 10762 mRNA_2394 0.80 -2.1
16,323 + 10762 mRNA_2394 0.80 0.9
16,329 - 10762 mRNA_2394 0.80 0.1
16,375 + 10762 mRNA_2394 0.84 -0.9
16,439 - 10762 mRNA_2394 0.88 0.3
16,469 + 10762 mRNA_2394 0.90 0.4
16,561 + -0.2
16,563 - -0.0
16,580 + -0.3
16,625 + -0.8
16,696 - -0.1
16,724 + -0.3
16,850 + -0.9
16,869 - -0.6
16,870 + 1.6
16,874 + 0.5
16,911 - 0.1
16,914 - 0.2
16,919 + -0.4
17,000 - -1.7
17,036 + -0.1
17,198 + 10763 mRNA_2395 0.15 0.2
17,273 + 10763 mRNA_2395 0.19 -0.3
17,431 - 10763 mRNA_2395 0.26 0.2
17,446 - 10763 mRNA_2395 0.27 1.3
17,449 - 10763 mRNA_2395 0.27 -0.1
17,455 + 10763 mRNA_2395 0.28 -0.2