Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_2303

Experiments: YNB Oleic Acid

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_2302: 10670 - HMMPfam-Fungal Zn(2)-Cys(6) binuclear cluster domain-PF00172,ProSiteProfiles-Zn(2)-C6 fungal-type DNA-binding domain profile.-PS50048,SMART-GAL4-like Zn(II)2Cys6 (or C6 zinc) binuclear cluster DNA-binding domain-SM00066,SUPERFAMILY--SSF57701, at 563015 to 564806 10670 mRNA_2303: 10671 - Hypothetical Protein, at 565712 to 566657 10671 mRNA_2304: 10672 - Hypothetical Protein, at 567046 to 568484 10672

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Oleic Acid
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564,716 + 0.1
564,717 + -1.3
564,725 + 0.8
564,763 - -1.0
564,862 + 0.1
564,863 + 0.8
564,867 + -0.1
564,870 + 1.3
564,875 - 0.5
564,886 - 0.3
564,892 + -1.2
564,982 + 0.6
564,987 - -0.6
564,989 + -1.4
564,996 - -0.6
564,997 + 1.2
564,998 - 0.6
565,002 + 0.4
565,009 + 0.6
565,109 - 0.2
565,134 + -0.0
565,136 + -0.8
565,162 + -1.2
565,181 + -2.8
565,188 - -0.5
565,194 + -1.3
565,194 + -0.2
565,207 + -0.7
565,223 + -0.8
565,315 + -0.7
565,316 + 0.4
565,327 - 0.3
565,333 - -0.3
565,339 + -1.8
565,360 - -1.2
565,377 - -1.1
565,388 + -1.4
565,390 - -0.4
565,391 + -0.2
565,395 - 0.6
565,405 + 1.6
565,408 + -0.0
565,416 - -1.4
565,416 + -0.7
565,427 - 0.9
565,432 - 0.3
565,433 + 1.8
565,456 + 0.6
565,561 - -1.6
565,601 + 0.7
566,216 + 10671 mRNA_2303 0.53 0.4
566,359 + 10671 mRNA_2303 0.68 0.3
566,486 - 10671 mRNA_2303 0.82 -1.0
566,630 + 0.4
566,763 - -0.3
566,765 - 1.0
566,765 - -0.7
566,891 - 0.5
567,210 - 10672 mRNA_2304 0.11 -0.5
567,228 - 10672 mRNA_2304 0.13 -0.2
567,358 - 10672 mRNA_2304 0.22 -0.2
567,513 + 10672 mRNA_2304 0.32 1.2
567,526 + 10672 mRNA_2304 0.33 -0.4