Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_2278

Experiments: YNB Oleic Acid

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_2277: 10645 - K13717 OTUD3 OTU domain-containing protein 3, at 502464 to 504545 10645 mRNA_2278: 10646 - KOG1118 Lysophosphatidic acid acyltransferase endophilin/SH3GL, involved in synaptic vesicle formation, at 504709 to 506668 10646 mRNA_2279: 10647 - K16369 CHO2 phosphatidylethanolamine N-methyltransferase, at 506960 to 510896 10647

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Oleic Acid
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503,798 + 10645 mRNA_2277 0.64 0.1
504,244 - 10645 mRNA_2277 0.85 0.5
504,535 - 0.1
504,809 - -1.2
504,920 + 10646 mRNA_2278 0.11 -0.1
505,202 - 10646 mRNA_2278 0.25 -0.6
505,524 + 10646 mRNA_2278 0.42 -2.0
506,394 - 10646 mRNA_2278 0.86 -0.4
506,573 - -0.5
506,579 + -1.0
506,580 - -0.9
506,712 + -0.1
506,714 + -0.1
506,718 - 1.2
506,720 + -0.3
506,843 + 0.2
506,861 - -0.4
506,867 - -0.5
506,887 - -1.5
507,019 + -0.9
507,156 + -0.6
507,290 - -0.3
507,434 - 10647 mRNA_2279 0.12 -0.5
507,447 + 10647 mRNA_2279 0.12 -1.4
507,469 + 10647 mRNA_2279 0.13 -2.3
507,471 + 10647 mRNA_2279 0.13 -1.7
507,587 + 10647 mRNA_2279 0.16 -1.3