Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_2212

Experiments: YNB Oleic Acid

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_2211: 10579 - K09486 HYOU1 hypoxia up-regulated 1, at 367556 to 370614 10579 mRNA_2212: 10580 - K04441 P38 p38 MAP kinase, at 371280 to 373458 10580 mRNA_2213: 10581 - Hypothetical Protein, at 373795 to 375886 10581

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Oleic Acid
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370,549 + 0.3
370,662 - 0.6
370,663 - -1.6
370,666 - 0.1
370,672 - 0.1
370,693 + 1.0
370,739 - -2.4
370,739 - 0.2
370,791 - -0.0
370,813 + 0.2
370,815 - 0.4
370,816 - 0.3
370,816 + 0.0
370,824 - -1.1
370,837 - -0.2
370,840 - -1.4
370,845 - -1.2
370,849 + -0.2
370,859 - 0.3
370,859 - -1.4
370,861 - -1.0
370,862 + -0.2
370,863 + -0.4
370,864 + -1.6
370,864 + 0.0
370,866 - 0.1
370,870 + -0.1
370,891 - -1.1
370,892 + 0.6
370,896 + 1.8
370,896 - -0.3
370,899 + 0.1
370,923 + -1.1
370,931 - -0.3
370,938 + -0.9
370,956 - -0.5
370,973 + 0.3
370,974 - -1.1
370,974 + -1.4
371,070 - -0.7
371,073 + 0.6
371,086 - -0.6
371,087 - 0.3
371,088 - -0.4
371,089 + 0.9
371,093 + 0.7
371,093 - 0.4
371,095 + -0.2
371,101 + 0.3
371,103 - -0.8
371,104 + 0.9
371,111 - 0.2
371,118 + 0.2
371,120 + -0.1
371,127 + -0.4
371,127 + -0.9
371,127 + 0.0
371,560 + 10580 mRNA_2212 0.13 -2.3
371,561 + 10580 mRNA_2212 0.13 -1.4
372,352 - 10580 mRNA_2212 0.49 -2.3
372,480 - 10580 mRNA_2212 0.55 -0.2
373,437 + 0.1
373,484 - -0.5
373,486 - 0.1
373,903 + 1.0
374,188 + 10581 mRNA_2213 0.19 -0.2
374,444 + 10581 mRNA_2213 0.31 1.1