Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_2040

Experiments: YNB Oleic Acid

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_2039: 10407 - KOG2895 Uncharacterized conserved protein, at 808552 to 810897 10407 mRNA_2040: 10408 - K11729 ACAD10 acyl-CoA dehydrogenase family member 10, at 811231 to 813728 10408

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Oleic Acid
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810,455 - 10407 mRNA_2039 0.81 -0.3
810,465 + 10407 mRNA_2039 0.82 -0.0
810,509 - 10407 mRNA_2039 0.83 -0.3
810,735 - -0.8
810,817 + 0.5
811,068 + -0.4
811,081 + -1.0
811,081 + -1.8
811,084 - -1.1
811,116 - -1.2
811,117 - -0.3
811,138 - -0.6
811,140 + 0.7
811,140 - 1.7
811,225 - 1.0
811,247 + -0.5
811,269 + -0.2
811,547 - 10408 mRNA_2040 0.13 -0.7
811,549 + 10408 mRNA_2040 0.13 -1.0
811,553 + 10408 mRNA_2040 0.13 -0.5
811,842 - 10408 mRNA_2040 0.24 -1.8
811,845 + 10408 mRNA_2040 0.25 -1.6
812,145 + 10408 mRNA_2040 0.37 -0.9
812,396 + 10408 mRNA_2040 0.47 1.1
812,436 - 10408 mRNA_2040 0.48 0.6
812,481 - 10408 mRNA_2040 0.50 -0.9
812,493 + 10408 mRNA_2040 0.51 -1.5
812,591 - 10408 mRNA_2040 0.54 0.0
812,771 + 10408 mRNA_2040 0.62 -0.2
813,191 - 10408 mRNA_2040 0.78 -0.3
813,328 - 10408 mRNA_2040 0.84 -1.4
813,332 - 10408 mRNA_2040 0.84 -1.8
813,491 + 0.3
813,507 + -1.0
813,642 - -1.4
813,792 - -0.6
813,803 + -0.0
813,819 + -0.8
813,823 - -0.1
813,824 - -0.4
813,827 + -1.0
813,829 - 1.2
813,829 - 0.5
813,833 + 0.9
813,835 - -0.3
814,314 + -1.3