Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_2024

Experiments: YNB Oleic Acid

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_2023: 10391 - K04718 SPHK sphingosine kinase, at 767575 to 770006 10391 mRNA_2024: 10392 - K15979 SND1 staphylococcal nuclease domain-containing protein 1, at 770180 to 773514 10392 mRNA_2025: 10393 - SUPERFAMILY--SSF53474, at 773905 to 776623 10393

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Oleic Acid
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769,267 + 10391 mRNA_2023 0.70 -0.8
769,452 - 10391 mRNA_2023 0.77 -0.7
769,752 + 10391 mRNA_2023 0.90 -0.2
769,860 - -0.5
770,012 - -2.0
770,015 - -0.2
770,024 + -0.5
770,032 - -1.3
770,033 + 0.7
770,052 + -0.8
770,052 + 0.1
770,177 - 0.1
770,184 + -0.8
770,187 - -0.4
770,464 - -0.7
770,745 - 10392 mRNA_2024 0.17 -0.7
770,908 - 10392 mRNA_2024 0.22 -0.5
771,044 + 10392 mRNA_2024 0.26 -0.4
771,341 - 10392 mRNA_2024 0.35 -0.4
771,354 + 10392 mRNA_2024 0.35 -0.1
771,502 + 10392 mRNA_2024 0.40 0.7
771,633 + 10392 mRNA_2024 0.44 -0.2
771,655 - 10392 mRNA_2024 0.44 -0.9
771,722 - 10392 mRNA_2024 0.46 -0.4
772,031 + 10392 mRNA_2024 0.56 1.2
772,947 - 10392 mRNA_2024 0.83 -0.2
773,452 - -0.3
773,518 + -0.1
773,670 - 0.4
773,672 + 0.6
773,808 - 0.1
773,832 - 0.4
773,836 - -0.4
773,843 - 0.6
773,843 + -0.6
773,850 + -0.1
773,864 - 0.0
773,981 - 0.2
773,997 + -2.0
774,001 + -0.2
774,117 - -0.6
774,121 - -0.1
774,147 + 0.5
774,263 + 10393 mRNA_2025 0.13 -0.8
774,306 + 10393 mRNA_2025 0.15 -0.4
774,388 - 10393 mRNA_2025 0.18 2.1
774,416 - 10393 mRNA_2025 0.19 -0.4
774,440 - 10393 mRNA_2025 0.20 -0.4
774,441 + 10393 mRNA_2025 0.20 -0.6
774,441 + 10393 mRNA_2025 0.20 -1.4