Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_1799

Experiments: YNB Oleic Acid

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_1798: 10166 - KOG0725 Reductases with broad range of substrate specificities, at 225398 to 226777 10166 mRNA_1799: 10167 - KOG2489 Transmembrane protein, at 226927 to 229515 10167 mRNA_1800: 10168 - KOG1208 Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases), at 229665 to 231047 10168

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Oleic Acid
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225,955 + 10166 mRNA_1798 0.40 -0.0
226,375 + 10166 mRNA_1798 0.71 0.0
226,382 + 10166 mRNA_1798 0.71 1.5
226,465 + 10166 mRNA_1798 0.77 -0.2
227,104 - -0.5
227,305 + 10167 mRNA_1799 0.15 -0.9
227,717 + 10167 mRNA_1799 0.31 0.5
228,134 + 10167 mRNA_1799 0.47 -1.1
228,137 - 10167 mRNA_1799 0.47 0.2
228,276 - 10167 mRNA_1799 0.52 -0.9
228,419 - 10167 mRNA_1799 0.58 -0.4
228,707 + 10167 mRNA_1799 0.69 1.0
228,859 - 10167 mRNA_1799 0.75 1.0
228,970 - 10167 mRNA_1799 0.79 -1.0
229,001 + 10167 mRNA_1799 0.80 -0.4
229,128 - 10167 mRNA_1799 0.85 -0.7
229,129 + 10167 mRNA_1799 0.85 -1.0
229,129 - 10167 mRNA_1799 0.85 -1.2
229,148 + 10167 mRNA_1799 0.86 -0.7
229,265 - 0.5
229,415 + -0.2
229,417 + 1.0
229,420 + -1.6
229,438 + -0.4
229,443 + -0.8
229,467 - -0.2
229,467 - -0.2
229,470 + 0.1
229,473 - -1.5
229,475 - 0.6
229,476 - 0.7
229,476 - -1.0
229,481 - 0.0
229,481 + 0.5
229,482 - 0.1
229,487 + -0.6
229,488 + -0.8
229,492 + 0.9
229,492 + -0.7
229,505 + 0.5
229,511 + -0.0
229,613 - -0.0
229,618 + -0.7
229,626 + -0.0
229,627 - -0.7
229,628 + 0.2
229,628 - -1.3
229,635 + -0.4
229,662 + -0.4
229,667 - 1.1
229,786 - -0.2
229,786 + -1.7
229,910 - 10168 mRNA_1800 0.18 -0.4
230,079 - 10168 mRNA_1800 0.30 0.4
230,084 + 10168 mRNA_1800 0.30 -0.5
230,215 + 10168 mRNA_1800 0.40 -1.1
230,335 + 10168 mRNA_1800 0.48 0.1
230,398 - 10168 mRNA_1800 0.53 0.2
230,489 + 10168 mRNA_1800 0.60 -0.0
230,489 + 10168 mRNA_1800 0.60 -0.3