Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_1779

Experiments: YNB Oleic Acid

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_1778: 10146 - HMMPfam-Protein of unknown function (DUF3140)-PF11338, at 183899 to 184487 10146 mRNA_1779: 10147 - KOG1336 Monodehydroascorbate/ferredoxin reductase, at 185059 to 187419 10147 mRNA_1780: 10148 - K03097 CSNK2A casein kinase II subunit alpha, at 188095 to 190025 10148

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Oleic Acid
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184,417 - 10146 mRNA_1778 0.88 -1.1
184,427 - 10146 mRNA_1778 0.90 0.8
184,433 + -0.5
184,565 + 0.2
184,845 - -1.9
184,853 + -2.3
184,856 - -1.1
184,881 + -0.2
184,882 - -1.3
184,883 + -0.1
184,891 + 0.9
184,894 - 1.1
184,898 - -0.9
184,899 - -0.4
184,933 - -0.8
184,954 + 3.5
185,068 - 0.3
185,079 - 0.2
185,245 + 0.4
185,257 + -0.5
185,259 - -0.1
185,402 + 10147 mRNA_1779 0.15 -0.8
185,452 - 10147 mRNA_1779 0.17 -0.8
185,466 + 10147 mRNA_1779 0.17 -0.3
185,492 - 10147 mRNA_1779 0.18 -0.7
185,496 - 10147 mRNA_1779 0.19 1.8
185,563 - 10147 mRNA_1779 0.21 0.6
185,795 - 10147 mRNA_1779 0.31 -1.4
185,964 - 10147 mRNA_1779 0.38 -0.7
186,055 - 10147 mRNA_1779 0.42 0.5
186,229 - 10147 mRNA_1779 0.50 0.7
186,345 + 10147 mRNA_1779 0.54 0.0
186,625 - 10147 mRNA_1779 0.66 0.3
186,726 + 10147 mRNA_1779 0.71 -0.2
186,749 + 10147 mRNA_1779 0.72 -0.2
186,783 + 10147 mRNA_1779 0.73 -0.9
186,795 + 10147 mRNA_1779 0.74 -0.3
187,213 + -1.5
187,404 + -0.8
187,485 + 0.6
187,515 - 1.4
187,627 - 0.2
187,631 - 0.0
187,653 + -0.6
187,671 + -0.0
187,677 - 0.0
187,681 - -0.8
187,684 - -0.9
187,731 - -0.4
187,733 - 0.2
187,736 - 1.5
187,739 + -0.0
187,748 - 1.0
187,750 + -0.3
187,750 - 0.4
187,758 - -0.3
187,762 - -1.9
187,763 + -0.5
187,789 - -0.5
187,798 + 0.7
187,814 + 0.1
187,820 + 1.1
187,956 + 0.3
187,970 + 0.5