Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_1760

Experiments: YNB Oleic Acid

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_1759: 10127 - K13345 PEX12, PAF3 peroxin-12, at 132751 to 134282 10127 mRNA_1760: 10128 - KOG0940 Ubiquitin protein ligase RSP5/NEDD4, at 134712 to 138303 10128

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Oleic Acid
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134,295 - -0.9
134,307 + 0.6
134,324 + -0.5
134,613 - -1.9
134,614 + -0.3
135,502 - 10128 mRNA_1760 0.22 0.2
135,595 + 10128 mRNA_1760 0.25 0.7
136,053 + 10128 mRNA_1760 0.37 -0.2
136,230 - 10128 mRNA_1760 0.42 0.1
136,319 - 10128 mRNA_1760 0.45 -0.6
136,410 - 10128 mRNA_1760 0.47 0.8
137,315 + 10128 mRNA_1760 0.72 -1.1
137,483 - 10128 mRNA_1760 0.77 0.3
137,671 + 10128 mRNA_1760 0.82 0.9
137,926 - 10128 mRNA_1760 0.89 -0.7
138,063 - -0.9
138,069 - -1.8
138,073 - -0.4
138,457 - 0.2
138,460 - -0.6
138,464 + -0.5
138,614 + 0.3
138,638 + 0.4
138,653 - -2.0
138,675 + 0.4
138,678 + -1.3
138,716 - 0.2
138,726 - 0.3
138,860 + -2.8
138,875 - 0.1
138,886 + -0.3
139,013 - 0.0
139,034 + -0.1
139,059 - -1.1
139,078 - -0.1
139,079 + -0.8
139,081 + -0.0
139,094 - -0.8
139,133 - -0.4
139,143 + -1.1
139,222 + -0.4
139,225 - -1.6
139,233 - -0.3
139,236 + -0.4
139,237 + -0.0
139,252 + 0.1
139,272 + -1.2
139,287 - 0.7
139,292 - 0.5