Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_1636

Experiments: YNB Oleic Acid

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_1635: 10003 - K18748 SSD1 protein SSD1, at 767214 to 771755 10003 mRNA_1636: 10004 - HMMPfam-Fungal Zn(2)-Cys(6) binuclear cluster domain-PF00172,ProSitePatterns-Zn(2)-C6 fungal-type DNA-binding domain signature.-PS00463,ProSiteProfiles-Zn(2)-C6 fungal-type DNA-binding domain profile.-PS50048,SMART-GAL4-like Zn(II)2Cys6 (or C6 zinc) binuclear cluster DNA-binding domain-SM00066,SUPERFAMILY--SSF57701, at 772019 to 773712 10004 mRNA_1637: 10005 - HMMPfam-Fungal Zn(2)-Cys(6) binuclear cluster domain-PF00172,ProSiteProfiles-Zn(2)-C6 fungal-type DNA-binding domain profile.-PS50048,SMART-GAL4-like Zn(II)2Cys6 (or C6 zinc) binuclear cluster DNA-binding domain-SM00066,SUPERFAMILY--SSF57701, at 773895 to 775574 10005

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Oleic Acid
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771,034 + 10003 mRNA_1635 0.84 -0.7
771,427 + -0.8
771,456 + 0.1
771,487 + -0.1
771,580 + -0.8
771,761 - -0.3
771,892 - -0.5
771,899 - -0.2
772,036 + 0.7
772,037 - -0.9
772,046 - 0.1
772,181 - 0.3
772,185 - 1.0
772,339 - 10004 mRNA_1636 0.19 0.1
772,355 + 10004 mRNA_1636 0.20 0.1
772,363 + 10004 mRNA_1636 0.20 -1.5
772,365 - 10004 mRNA_1636 0.20 -1.3
772,447 + 10004 mRNA_1636 0.25 -0.9
772,488 - 10004 mRNA_1636 0.28 -0.5
772,644 - 10004 mRNA_1636 0.37 0.4
772,762 + 10004 mRNA_1636 0.44 -1.7
772,944 - 10004 mRNA_1636 0.55 -0.9
773,061 + 10004 mRNA_1636 0.62 -0.2
773,346 + 10004 mRNA_1636 0.78 -1.0
773,359 - 10004 mRNA_1636 0.79 -0.2
773,375 - 10004 mRNA_1636 0.80 -3.1
773,737 - 0.6
773,812 - 0.9
773,978 - -1.6
773,978 + 0.1
774,123 - 10005 mRNA_1637 0.14 -0.5
774,233 - 10005 mRNA_1637 0.20 -0.3
774,366 + 10005 mRNA_1637 0.28 -3.0
774,419 + 10005 mRNA_1637 0.31 -2.3