Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_1486

Experiments: Sorted High BODIPY Gate

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_1485: 9853 - HMMPfam-WW domain-PF00397,ProSitePatterns-WW/rsp5/WWP domain signature.-PS01159,ProSiteProfiles-WW/rsp5/WWP domain profile.-PS50020,SMART-Domain with 2 conserved Trp (W) residues-SM00456,SUPERFAMILY--SSF51045, at 412872 to 413936 9853 mRNA_1486: 9854 - K11085 msbA ATP-binding cassette, subfamily B, bacterial MsbA, at 414021 to 419409 9854 mRNA_1487: 9855 - K01883 CARS, cysS cysteinyl-tRNA synthetase, at 420051 to 423071 9855

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Per-strain Table

Position Strand Gene Sysname Fraction Sorted High BODIPY Gate
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413,277 - 9853 mRNA_1485 0.38 -1.3
413,446 - 9853 mRNA_1485 0.54 0.4
413,574 - 9853 mRNA_1485 0.66 -0.3
413,645 + 9853 mRNA_1485 0.73 0.3
413,710 + 9853 mRNA_1485 0.79 -1.2
413,843 - 2.0
413,907 + -0.6
414,189 - -0.2
414,190 + -0.7
414,242 + -0.2
414,471 + 0.4
414,871 - 9854 mRNA_1486 0.16 -0.3
415,018 + 9854 mRNA_1486 0.19 0.7
415,042 + 9854 mRNA_1486 0.19 -0.7
415,049 - 9854 mRNA_1486 0.19 -3.2
415,203 + 9854 mRNA_1486 0.22 0.3
415,322 - 9854 mRNA_1486 0.24 0.4
415,467 - 9854 mRNA_1486 0.27 -0.5
415,496 - 9854 mRNA_1486 0.27 -0.4
415,509 + 9854 mRNA_1486 0.28 -1.4
415,539 + 9854 mRNA_1486 0.28 0.0
415,545 - 9854 mRNA_1486 0.28 -1.4
415,705 - 9854 mRNA_1486 0.31 -0.1
415,912 + 9854 mRNA_1486 0.35 0.7
415,938 - 9854 mRNA_1486 0.36 -1.8
415,943 - 9854 mRNA_1486 0.36 0.2
416,025 - 9854 mRNA_1486 0.37 -1.7
416,067 + 9854 mRNA_1486 0.38 -1.7
416,215 - 9854 mRNA_1486 0.41 0.2
416,392 + 9854 mRNA_1486 0.44 -0.5
416,529 - 9854 mRNA_1486 0.47 -0.3
416,530 + 9854 mRNA_1486 0.47 0.1
416,690 + 9854 mRNA_1486 0.50 -0.5
416,730 - 9854 mRNA_1486 0.50 0.0
416,743 - 9854 mRNA_1486 0.51 1.5
416,754 + 9854 mRNA_1486 0.51 -0.5
417,131 + 9854 mRNA_1486 0.58 0.4
417,184 + 9854 mRNA_1486 0.59 -0.8
417,268 + 9854 mRNA_1486 0.60 -2.4
417,301 - 9854 mRNA_1486 0.61 -1.4
417,366 - 9854 mRNA_1486 0.62 -0.5
417,812 + 9854 mRNA_1486 0.70 1.2
417,931 + 9854 mRNA_1486 0.73 -0.1
417,984 + 9854 mRNA_1486 0.74 0.2
418,175 - 9854 mRNA_1486 0.77 -2.1
418,283 - 9854 mRNA_1486 0.79 -1.3
418,345 + 9854 mRNA_1486 0.80 -1.1
418,634 - 9854 mRNA_1486 0.86 -0.6
418,790 + 9854 mRNA_1486 0.88 -2.1
418,828 - 9854 mRNA_1486 0.89 -0.2
419,060 + 0.1
419,064 - 0.5
419,129 - -0.1
419,222 + -0.5
419,388 - -2.6
419,393 + 1.6
419,479 - -0.4
419,488 + 0.3
419,532 - -1.2
419,537 - -0.1
419,545 + -0.8
419,682 - -0.5
419,702 + -0.5
419,785 + 0.5
419,840 + -1.0