Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_1485

Experiments: Sorted High BODIPY Gate

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_1484: 9852 - HMMPfam-Cation efflux family-PF01545,SUPERFAMILY--SSF161111, at 410749 to 412587 9852 mRNA_1485: 9853 - HMMPfam-WW domain-PF00397,ProSitePatterns-WW/rsp5/WWP domain signature.-PS01159,ProSiteProfiles-WW/rsp5/WWP domain profile.-PS50020,SMART-Domain with 2 conserved Trp (W) residues-SM00456,SUPERFAMILY--SSF51045, at 412872 to 413936 9853 mRNA_1486: 9854 - K11085 msbA ATP-binding cassette, subfamily B, bacterial MsbA, at 414021 to 419409 9854

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Per-strain Table

Position Strand Gene Sysname Fraction Sorted High BODIPY Gate
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412,115 + 9852 mRNA_1484 0.74 0.7
412,261 - 9852 mRNA_1484 0.82 0.4
412,269 - 9852 mRNA_1484 0.83 1.0
412,282 - 9852 mRNA_1484 0.83 -0.8
412,314 + 9852 mRNA_1484 0.85 -1.2
412,476 - -0.7
412,673 + -0.0
412,678 + 0.0
412,682 - -0.3
412,690 + 0.1
412,812 + -0.4
412,815 + -0.2
412,827 - -2.1
412,848 - -1.6
412,848 - -0.8
412,872 - -0.5
413,002 - 9853 mRNA_1485 0.12 -1.4
413,006 - 9853 mRNA_1485 0.13 -0.4
413,277 - 9853 mRNA_1485 0.38 -1.3
413,446 - 9853 mRNA_1485 0.54 0.4
413,574 - 9853 mRNA_1485 0.66 -0.3
413,645 + 9853 mRNA_1485 0.73 0.3
413,710 + 9853 mRNA_1485 0.79 -1.2
413,843 - 2.0
413,907 + -0.6
414,189 - -0.2
414,190 + -0.7
414,242 + -0.2
414,471 + 0.4
414,871 - 9854 mRNA_1486 0.16 -0.3