Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_1451

Experiments: Sorted High BODIPY Gate

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_1450: 9818 - K20826 RPAP1 RNA polymerase II-associated protein 1, at 317721 to 321691 9818 mRNA_1451: 9819 - K11987 PTGS2, COX2 prostaglandin-endoperoxide synthase 2, at 321832 to 325764 9819 mRNA_1452: 9820 - K07241 nixA high-affinity nickel-transport protein, at 326244 to 328401 9820

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Per-strain Table

Position Strand Gene Sysname Fraction Sorted High BODIPY Gate
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321,083 - 9818 mRNA_1450 0.85 -3.1
321,146 - 9818 mRNA_1450 0.86 -1.1
321,152 - 9818 mRNA_1450 0.86 -0.2
321,153 + 9818 mRNA_1450 0.86 -1.8
321,644 - 0.0
321,860 + 0.1
321,903 - -0.3
322,279 - 9819 mRNA_1451 0.11 -0.7
322,898 - 9819 mRNA_1451 0.27 -0.4
323,660 + 9819 mRNA_1451 0.46 -1.2
323,737 + 9819 mRNA_1451 0.48 -0.7
323,777 - 9819 mRNA_1451 0.49 1.2
324,666 + 9819 mRNA_1451 0.72 0.5
324,786 + 9819 mRNA_1451 0.75 -0.5
324,792 + 9819 mRNA_1451 0.75 0.4
324,956 + 9819 mRNA_1451 0.79 -0.4
325,090 - 9819 mRNA_1451 0.83 0.1
325,261 - 9819 mRNA_1451 0.87 -1.7
325,279 + 9819 mRNA_1451 0.88 -0.5
325,560 + 0.4
325,681 + -2.0
325,814 + 0.7
325,834 + 0.4
325,848 - -4.8
325,852 + 0.4
325,854 - 0.2
325,862 - -0.4
325,862 - -0.9
325,862 - -0.2
325,863 + -2.3
325,868 - -2.7
325,875 + -0.1
325,880 - -1.0
325,884 + -1.1
325,931 - 1.2
325,942 - 1.8
325,943 + 0.8
325,982 - -0.1
325,993 - -0.8
325,994 + 0.1
325,996 + 0.5
325,999 + -0.1
326,000 + 0.3
326,002 + 0.2
326,003 - 0.5
326,008 + 1.2
326,010 + 0.0
326,144 - -0.2
326,302 + 0.9