Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_993

Experiments: Sorted High BODIPY Gate

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_993: 9361 - HMMPfam-Zinc finger, C2H2 type-PF00096,HMMPfam-C2H2-type zinc finger-PF13894,ProSitePatterns-Zinc finger C2H2 type domain signature.-PS00028,ProSiteProfiles-Zinc finger C2H2 type domain profile.-PS50157,SMART-zinc finger-SM00355,SUPERFAMILY--SSF57667, at 151634 to 153360 9361 mRNA_994: 9362 - K08513 VAMP4 vesicle-associated membrane protein 4, at 154065 to 154836 9362

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Per-strain Table

Position Strand Gene Sysname Fraction Sorted High BODIPY Gate
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152,336 - 9361 mRNA_993 0.41 0.7
152,532 - 9361 mRNA_993 0.52 -1.0
152,682 + 9361 mRNA_993 0.61 -0.1
152,754 - 9361 mRNA_993 0.65 0.3
152,775 + 9361 mRNA_993 0.66 0.5
152,790 + 9361 mRNA_993 0.67 -0.2
152,794 + 9361 mRNA_993 0.67 -1.0
152,807 - 9361 mRNA_993 0.68 1.1
152,859 + 9361 mRNA_993 0.71 -1.0
152,951 - 9361 mRNA_993 0.76 -1.5
152,978 + 9361 mRNA_993 0.78 -0.4
152,982 + 9361 mRNA_993 0.78 -1.7
152,992 + 9361 mRNA_993 0.79 -1.2
153,130 - 9361 mRNA_993 0.87 -0.7
153,135 - 9361 mRNA_993 0.87 -0.8
153,155 - 9361 mRNA_993 0.88 -0.6
153,232 - -0.3
153,251 + -1.9
153,277 - -0.6
153,285 - -1.7
153,286 + 1.5
153,305 - -1.7
153,309 + 0.3
153,341 + -1.2
153,435 - -0.4
153,442 + -3.4
153,454 + 0.6
153,467 - -1.3
153,470 + -1.1
153,482 + 0.2
153,488 - 0.3
153,489 - -0.4
153,490 - 0.6
153,490 - -0.7
153,528 + -1.0
153,546 - -0.0
153,578 + 0.8
153,598 - -0.4
153,685 + -1.5
153,750 - -0.6
153,877 + -1.7
153,998 + -0.3
154,033 + 0.8
154,080 - -3.1
154,093 + -0.3
154,180 - 9362 mRNA_994 0.15 0.2