Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_403

Experiments: Sorted High BODIPY Gate

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_402: 8770 - BLAST N-terminal acetyltransferase catalytic subunit Nat1 [..., at 936053 to 937253 8770 mRNA_403: 8771 - Hypothetical Protein, at 937327 to 938664 8771 mRNA_404: 8772 - HMMPfam-PB1 domain-PF00564,HMMPfam-Zinc finger, ZZ type-PF00569,ProSitePatterns-Zinc finger ZZ-type signature.-PS01357,ProSiteProfiles-Zinc finger ZZ-type profile.-PS50135,SMART-Zinc-binding domain, present in Dystrophin, CREB-binding protein.-SM00291,SUPERFAMILY--SSF54277,SUPERFAMILY--SSF57850, at 939095 to 942093 8772

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Per-strain Table

Position Strand Gene Sysname Fraction Sorted High BODIPY Gate
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936,330 - 8770 mRNA_402 0.23 -1.3
936,331 - 8770 mRNA_402 0.23 -3.0
936,332 - 8770 mRNA_402 0.23 -1.0
936,343 - 8770 mRNA_402 0.24 -1.8
936,349 - 8770 mRNA_402 0.25 0.3
936,368 + 8770 mRNA_402 0.26 -0.5
936,380 - 8770 mRNA_402 0.27 -0.3
936,381 - 8770 mRNA_402 0.27 -2.6
936,381 - 8770 mRNA_402 0.27 -1.2
936,384 + 8770 mRNA_402 0.28 -0.3
936,385 + 8770 mRNA_402 0.28 -1.9
936,396 + 8770 mRNA_402 0.29 -0.0
936,396 - 8770 mRNA_402 0.29 -1.9
936,429 - 8770 mRNA_402 0.31 -0.6
936,477 - 8770 mRNA_402 0.35 -1.9
936,512 + 8770 mRNA_402 0.38 -0.4
936,539 + 8770 mRNA_402 0.40 0.3
936,542 + 8770 mRNA_402 0.41 -2.3
936,545 + 8770 mRNA_402 0.41 -0.8
936,550 + 8770 mRNA_402 0.41 -2.6
936,567 - 8770 mRNA_402 0.43 0.5
936,578 + 8770 mRNA_402 0.44 -0.6
936,615 + 8770 mRNA_402 0.47 -1.2
936,633 + 8770 mRNA_402 0.48 -0.1
936,645 - 8770 mRNA_402 0.49 -1.5
936,649 - 8770 mRNA_402 0.50 -1.9
936,652 - 8770 mRNA_402 0.50 -1.5
936,664 + 8770 mRNA_402 0.51 -1.9
936,664 + 8770 mRNA_402 0.51 -2.3
936,669 + 8770 mRNA_402 0.51 -1.0
936,683 - 8770 mRNA_402 0.52 -0.5
936,683 - 8770 mRNA_402 0.52 -3.6
936,703 - 8770 mRNA_402 0.54 0.7
936,712 - 8770 mRNA_402 0.55 -2.9
936,743 - 8770 mRNA_402 0.57 -2.8
936,750 - 8770 mRNA_402 0.58 -1.2
936,750 - 8770 mRNA_402 0.58 -3.3
936,772 + 8770 mRNA_402 0.60 -2.4
936,774 - 8770 mRNA_402 0.60 -1.3
936,775 + 8770 mRNA_402 0.60 -1.4
936,781 + 8770 mRNA_402 0.61 -1.0
936,790 + 8770 mRNA_402 0.61 1.0
936,791 - 8770 mRNA_402 0.61 -3.1
936,793 - 8770 mRNA_402 0.62 -1.5
936,801 - 8770 mRNA_402 0.62 -0.2
936,809 - 8770 mRNA_402 0.63 -1.2
936,813 - 8770 mRNA_402 0.63 -2.1
936,817 - 8770 mRNA_402 0.64 -1.0
936,827 - 8770 mRNA_402 0.64 -2.0
936,829 + 8770 mRNA_402 0.65 -3.0
936,830 - 8770 mRNA_402 0.65 -1.1
936,832 - 8770 mRNA_402 0.65 -1.4
936,837 + 8770 mRNA_402 0.65 -1.5
936,887 - 8770 mRNA_402 0.69 -3.3
937,262 - -1.4
937,277 - -1.9
937,279 - -0.7
937,281 - -0.7
937,285 - -4.0
937,289 + -1.5
937,292 - -4.1
937,306 + -3.6
937,310 + -2.6
937,311 - -1.7
937,385 - -1.0
937,394 - -1.0
937,400 + -1.7
937,405 - 0.4
937,406 + -2.4
937,409 + -2.0
937,409 + -1.2
937,411 + -1.0
937,411 + -0.1
937,412 + -1.5
937,414 - -3.1
937,417 - -0.2
937,419 + -0.6
937,422 - -2.0
937,424 + -1.2
937,429 - 0.5
937,433 + 0.5
937,434 - -1.8
937,537 - 8771 mRNA_403 0.16 -2.2
937,541 - 8771 mRNA_403 0.16 -1.5
937,553 + 8771 mRNA_403 0.17 -2.5
937,562 + 8771 mRNA_403 0.18 -1.2
937,567 - 8771 mRNA_403 0.18 -2.1
937,580 + 8771 mRNA_403 0.19 -2.4
937,588 + 8771 mRNA_403 0.20 0.0
937,607 - 8771 mRNA_403 0.21 -3.2
937,635 - 8771 mRNA_403 0.23 -1.7
937,646 + 8771 mRNA_403 0.24 -2.9
937,712 + 8771 mRNA_403 0.29 0.6
937,712 + 8771 mRNA_403 0.29 -4.1
937,726 - 8771 mRNA_403 0.30 -2.4
937,750 + 8771 mRNA_403 0.32 -0.8
937,751 + 8771 mRNA_403 0.32 -0.8
937,775 - 8771 mRNA_403 0.33 -1.9
937,813 - 8771 mRNA_403 0.36 -0.4
937,830 + 8771 mRNA_403 0.38 -1.4
937,871 - 8771 mRNA_403 0.41 -4.3
937,931 + 8771 mRNA_403 0.45 -2.1
938,092 + 8771 mRNA_403 0.57 -4.5
938,188 - 8771 mRNA_403 0.64 -1.8
938,327 - 8771 mRNA_403 0.75 -2.3
938,351 - 8771 mRNA_403 0.77 -1.5
938,481 + 8771 mRNA_403 0.86 -0.6
938,532 - -0.4
938,545 + -2.0
938,621 + -2.3
938,654 + -0.4
939,082 - -0.9
939,087 + -1.3
939,114 + -1.1
939,190 + 0.9
939,393 + -3.1
939,592 - 8772 mRNA_404 0.17 -0.3