Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_4

Experiments: Sorted High BODIPY Gate

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_3: 8371 - K15161 CCNC, SSN8 cyclin C, at 8155 to 10023 8371 mRNA_4: 8372 - K00772 mtaP, MTAP 5'-methylthioadenosine phosphorylase, at 10225 to 11839 8372 mRNA_5: 8373 - SUPERFAMILY--SSF51695, at 12047 to 13694 8373

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Per-strain Table

Position Strand Gene Sysname Fraction Sorted High BODIPY Gate
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9,290 + 8371 mRNA_3 0.61 -1.5
9,293 - 8371 mRNA_3 0.61 0.4
9,293 - 8371 mRNA_3 0.61 0.2
9,321 + 8371 mRNA_3 0.62 -1.8
9,595 - 8371 mRNA_3 0.77 1.1
9,699 + 8371 mRNA_3 0.83 -0.7
9,699 + 8371 mRNA_3 0.83 0.5
9,864 - -3.3
9,885 + -0.8
9,887 - -0.7
9,889 + -0.2
9,890 - 0.8
9,920 + -1.0
9,921 + 0.2
9,946 - -1.2
9,986 + -0.9
9,998 - 0.0
10,003 - -0.1
10,039 - 0.1
10,045 - -0.4
10,059 + -1.1
10,066 + 0.3
10,067 + -1.3
10,071 + -0.8
10,074 - 0.6
10,076 - 0.3
10,095 + 1.3
10,120 + -0.8
10,123 + -2.1
10,197 + -0.0
10,214 + -0.5
10,229 + -1.8
10,230 - -1.9
10,241 + 1.3
10,241 + 0.1
10,357 - -1.5
10,521 - 8372 mRNA_4 0.18 0.6
10,663 + 8372 mRNA_4 0.27 -2.0
10,915 - 8372 mRNA_4 0.43 0.3
11,415 - 8372 mRNA_4 0.74 -0.1
11,519 - 8372 mRNA_4 0.80 -1.5
11,848 + 0.9
11,850 - 2.9
11,972 + -0.1
12,045 + -0.0
12,157 + 2.1
12,167 - 0.4
12,186 - -0.8
12,190 + -0.9
12,347 - 8373 mRNA_5 0.18 1.2
12,460 + 8373 mRNA_5 0.25 1.4
12,560 + 8373 mRNA_5 0.31 -1.8
12,571 + 8373 mRNA_5 0.32 0.7
12,576 - 8373 mRNA_5 0.32 -1.8
12,622 - 8373 mRNA_5 0.35 -0.9
12,669 + 8373 mRNA_5 0.38 0.5
12,747 + 8373 mRNA_5 0.42 -0.1