Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_1

Experiments: Sorted High BODIPY Gate

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_1: 8369 - K12198 CHMP5, VPS60 charged multivesicular body protein 5, at 1571 to 2453 8369 mRNA_2: 8370 - PRINTS-Proline rich extensin signature-PR01217, at 3233 to 7809 8370

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Per-strain Table

Position Strand Gene Sysname Fraction Sorted High BODIPY Gate
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595 + -1.8
609 - -0.5
637 - -2.5
651 + -1.4
654 + 0.2
659 - -0.9
663 + 0.1
672 - 1.3
673 + 0.3
685 + -0.9
725 + -1.9
790 - 0.7
791 + -1.9
798 + 1.3
798 + -2.0
804 - -0.9
821 + -1.4
860 + 2.3
899 - 1.1
916 + 0.9
939 + -0.2
957 + 1.0
975 - -1.2
976 + -0.9
996 - -2.1
1,005 + -0.4
1,005 - 0.3
1,007 - 1.3
1,052 + -0.3
1,058 + 0.0
1,070 + -0.1
1,113 - -0.5
1,115 - -0.1
1,117 + -0.8
1,207 + 0.4
1,257 + 0.1
1,285 - -0.7
1,359 - 0.6
1,422 + 0.0
1,960 + 8369 mRNA_1 0.44 -1.9
2,268 + 8369 mRNA_1 0.79 -2.7
2,361 - 8369 mRNA_1 0.89 -1.0
2,441 + -2.3
2,550 + 3.1
2,552 - -1.2
2,564 + -0.2
2,701 + -1.6
2,839 - -0.3
2,853 + -0.4
2,946 - -1.0
3,005 - 0.6
3,125 - -1.2
3,136 + -0.5