Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_6106

Experiments: Sorted High BODIPY Gate

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_6106: 14474 - K08332 VAC8 vacuolar protein 8, at 223 to 3658 14474 mRNA_6107: 14475 - K14401 CPSF1, CFT1 cleavage and polyadenylation specificity factor subunit 1, at 3990 to 10005 14475

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Per-strain Table

Position Strand Gene Sysname Fraction Sorted High BODIPY Gate
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39 + -0.7
39 + -1.6
40 + -0.2
40 + -1.8
40 + 1.4
41 + 0.5
56 + 0.3
56 + -0.7
56 + 0.0
58 + 1.6
59 + -0.2
59 + -3.5
62 - 2.2
65 - -0.5
77 + 0.4
84 + 0.0
102 + -2.6
137 + -3.7
151 + -0.3
200 + 0.0
208 + -0.6
216 + -2.6
229 + -1.3
348 - -0.0
430 + 1.4
498 - -0.0
502 - -2.1
685 + 14474 mRNA_6106 0.13 -0.7
747 + 14474 mRNA_6106 0.15 -0.5
755 + 14474 mRNA_6106 0.15 -2.0
946 + 14474 mRNA_6106 0.21 -2.6
975 + 14474 mRNA_6106 0.22 -2.3
1,245 + 14474 mRNA_6106 0.30 -0.4
2,125 + 14474 mRNA_6106 0.55 0.5
2,839 - 14474 mRNA_6106 0.76 0.0
3,125 - 14474 mRNA_6106 0.84 -1.9
3,248 - 14474 mRNA_6106 0.88 -2.9
3,570 + -2.4
3,665 + -2.4
3,692 + 1.6
3,706 + -0.9
3,726 + 0.9
3,820 + -0.2
3,853 + -0.0
3,859 + -1.1
3,909 - -0.2
3,929 - -3.3