Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_5863

Experiments: Sorted High BODIPY Gate

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_5862: 14230 - K14998 SURF1, SHY1 surfeit locus 1 family protein, at 1110574 to 1111803 14230 mRNA_5863: 14231 - K09281 K09281 copper-fist transcription factor, at 1112014 to 1113676 14231 mRNA_5864: 14232 - K01322 PREP prolyl oligopeptidase, at 1113887 to 1116821 14232

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Per-strain Table

Position Strand Gene Sysname Fraction Sorted High BODIPY Gate
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1,111,090 + 14230 mRNA_5862 0.42 0.7
1,111,360 + 14230 mRNA_5862 0.64 1.0
1,111,634 - 14230 mRNA_5862 0.86 1.2
1,112,077 + 0.9
1,112,234 + 14231 mRNA_5863 0.13 0.0
1,112,545 + 14231 mRNA_5863 0.32 -0.2
1,112,823 + 14231 mRNA_5863 0.49 -1.2
1,113,674 + 0.3
1,113,690 + -0.5
1,113,838 - 0.0
1,113,857 + 0.2
1,113,968 - -0.3
1,113,977 + 0.5
1,114,138 - -0.6
1,114,146 - -0.3
1,114,158 - -2.3
1,114,163 + -2.0
1,114,168 - -3.0
1,114,185 - 14232 mRNA_5864 0.10 -1.3
1,114,276 - 14232 mRNA_5864 0.13 -1.5
1,114,308 - 14232 mRNA_5864 0.14 -0.1
1,114,366 - 14232 mRNA_5864 0.16 -0.9
1,114,642 + 14232 mRNA_5864 0.26 0.1