Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_4902

Experiments: Sorted High BODIPY Gate

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_4901: 13269 - K03163 TOP1 DNA topoisomerase I, at 1259473 to 1262647 13269 mRNA_4902: 13270 - HMMPfam-Fungal Zn(2)-Cys(6) binuclear cluster domain-PF00172,ProSitePatterns-Zn(2)-C6 fungal-type DNA-binding domain signature.-PS00463,ProSiteProfiles-Zn(2)-C6 fungal-type DNA-binding domain profile.-PS50048,SMART-GAL4-like Zn(II)2Cys6 (or C6 zinc) binuclear cluster DNA-binding domain-SM00066,SUPERFAMILY--SSF57701, at 1263087 to 1265892 13270 mRNA_4903: 13271 - BLAST topoisomerase i [Xanthophyllomyces dendrorhous], at 1266011 to 1266275 13271 mRNA_4904: 13272 - K00367 narB ferredoxin-nitrate reductase, at 1266419 to 1270865 13272

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Per-strain Table

Position Strand Gene Sysname Fraction Sorted High BODIPY Gate
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1,262,221 - 13269 mRNA_4901 0.87 0.7
1,262,683 + -0.7
1,262,744 - 0.9
1,262,835 - -2.2
1,262,849 - -0.6
1,262,850 + 0.3
1,262,968 - -3.5
1,262,980 + -0.9
1,262,981 + 1.1
1,262,983 - 0.1
1,262,986 + 0.6
1,262,993 - -0.0
1,263,021 - -0.5
1,263,036 + 0.2
1,263,170 - -1.7
1,263,297 - -0.4
1,263,333 + 0.1
1,263,462 - 13270 mRNA_4902 0.13 -0.5
1,263,598 + 13270 mRNA_4902 0.18 -0.7
1,263,763 - 13270 mRNA_4902 0.24 -0.7
1,263,827 + 13270 mRNA_4902 0.26 0.8
1,263,885 - 13270 mRNA_4902 0.28 0.3
1,263,904 - 13270 mRNA_4902 0.29 0.2
1,264,032 - 13270 mRNA_4902 0.34 -0.7
1,264,058 + 13270 mRNA_4902 0.35 -0.4
1,264,502 + 13270 mRNA_4902 0.50 -0.2
1,264,697 - 13270 mRNA_4902 0.57 0.0
1,265,087 - 13270 mRNA_4902 0.71 -2.6
1,265,329 + 13270 mRNA_4902 0.80 -1.2
1,265,512 + 13270 mRNA_4902 0.86 0.3
1,265,513 + 13270 mRNA_4902 0.86 -0.4
1,265,636 - -0.3
1,265,653 - -1.3
1,265,658 - -2.0
1,265,913 - 1.7
1,266,410 - 0.6
1,266,508 + 0.4
1,266,549 + 0.1
1,266,656 - -0.2
1,266,665 - 0.3
1,266,677 - 0.1