Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_3409

Experiments: Sorted High BODIPY Gate

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_3408: 11776 - K00012 UGDH, ugd UDPglucose 6-dehydrogenase, at 18200 to 20454 11776 mRNA_3409: 11777 - K05658 ABCB1, CD243 ATP-binding cassette, subfamily B (MDR/TAP), member 1, at 20794 to 26649 11777 mRNA_3410: 11778 - BLAST allergen [Malassezia sympodialis ATCC 42132], at 27190 to 28187 11778

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Per-strain Table

Position Strand Gene Sysname Fraction Sorted High BODIPY Gate
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20,780 + 0.2
20,827 - 0.0
20,867 + -0.3
20,938 - 0.6
21,514 - 11777 mRNA_3409 0.12 -0.7
21,825 + 11777 mRNA_3409 0.18 -0.4
21,826 + 11777 mRNA_3409 0.18 1.5
21,927 + 11777 mRNA_3409 0.19 0.3
21,952 + 11777 mRNA_3409 0.20 -0.7
21,956 + 11777 mRNA_3409 0.20 -2.4
22,176 + 11777 mRNA_3409 0.24 0.5
22,259 - 11777 mRNA_3409 0.25 -0.7
22,406 - 11777 mRNA_3409 0.28 -1.0
22,540 + 11777 mRNA_3409 0.30 -0.8
22,585 - 11777 mRNA_3409 0.31 0.1
22,681 - 11777 mRNA_3409 0.32 -0.1
23,218 + 11777 mRNA_3409 0.41 0.3
23,523 + 11777 mRNA_3409 0.47 0.0
23,688 + 11777 mRNA_3409 0.49 0.4
23,858 - 11777 mRNA_3409 0.52 -0.5
24,136 - 11777 mRNA_3409 0.57 -0.5
24,233 + 11777 mRNA_3409 0.59 -1.8
24,554 + 11777 mRNA_3409 0.64 -1.9
24,862 - 11777 mRNA_3409 0.69 0.6
25,281 - 11777 mRNA_3409 0.77 -1.1
25,657 + 11777 mRNA_3409 0.83 0.3
25,946 + 11777 mRNA_3409 0.88 1.2
26,269 + -0.6
26,289 + -0.2
26,293 + -0.3
26,306 + 0.3
26,435 - -0.5
26,460 + 0.2
26,543 + -3.3
26,559 - 0.4
26,572 + -0.1
26,589 - 0.5
26,590 + 0.7
26,596 + -0.2
26,602 + -0.3
26,621 - -0.3
26,640 - -1.3
26,645 + -1.8
26,647 - 0.2
26,654 + -0.4
26,654 - 0.2
26,666 - -1.0
26,915 + 0.3
26,941 - 0.1
26,942 - 1.7
26,947 + -0.0
26,957 + -0.6
27,048 + 0.5
27,130 + 0.0
27,371 + 11778 mRNA_3410 0.18 -0.2
27,378 + 11778 mRNA_3410 0.19 -1.9
27,394 - 11778 mRNA_3410 0.20 0.4
27,403 + 11778 mRNA_3410 0.21 -0.8
27,518 - 11778 mRNA_3410 0.33 0.4
27,574 - 11778 mRNA_3410 0.38 -1.3