Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_3028

Experiments: Sorted High BODIPY Gate

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_3027: 11395 - HMMPfam-PH domain-PF00169,ProSiteProfiles-PH domain profile.-PS50003,SMART-Pleckstrin homology domain.-SM00233,SUPERFAMILY--SSF103657,SUPERFAMILY--SSF50729, at 130169 to 132601 11395 mRNA_3028: 11396 - Hypothetical Protein, at 132999 to 134584 11396 mRNA_3029: 11397 - K14688 SLC30A1, ZNT1 solute carrier family 30 (zinc transporter), member 1, at 134923 to 137066 11397

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Per-strain Table

Position Strand Gene Sysname Fraction Sorted High BODIPY Gate
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132,691 - 1.8
132,725 - -1.1
132,729 - -0.9
132,743 - 0.6
132,743 - 1.1
132,754 - -0.3
132,756 + 0.1
132,851 - -3.4
132,866 - 1.7
132,869 + -0.3
132,874 + 0.5
132,874 + -2.2
132,876 - -0.2
132,883 - 0.4
132,888 + 0.4
132,888 - 0.2
132,892 + -0.5
132,896 + 0.5
132,907 - -0.2
132,908 - -1.9
132,908 + -0.8
132,909 - -1.5
132,916 + -0.5
132,921 - -0.4
132,921 - -0.2
132,923 + -1.8
133,022 - 0.4
133,061 - -0.8
133,063 - -0.7
133,071 + 1.0
133,080 + 0.4
133,201 + 11396 mRNA_3028 0.13 -0.4
133,209 + 11396 mRNA_3028 0.13 -2.9
133,214 - 11396 mRNA_3028 0.14 0.3
133,222 + 11396 mRNA_3028 0.14 0.2
133,332 - 11396 mRNA_3028 0.21 -1.2
133,332 - 11396 mRNA_3028 0.21 -0.5
133,340 - 11396 mRNA_3028 0.22 -0.1
133,342 - 11396 mRNA_3028 0.22 0.1
133,357 + 11396 mRNA_3028 0.23 0.6
133,357 + 11396 mRNA_3028 0.23 -1.4
133,438 + 11396 mRNA_3028 0.28 -0.9
133,518 - 11396 mRNA_3028 0.33 0.2
133,638 - 11396 mRNA_3028 0.40 0.5
134,275 + 11396 mRNA_3028 0.80 -1.6
134,286 + 11396 mRNA_3028 0.81 -3.0
134,586 - -0.5
134,616 - 0.2
134,641 - -0.3
134,649 + -1.0
134,808 - -2.0
134,828 + -0.3
134,904 + -1.8
134,917 + -1.7
134,919 + 0.7
134,926 - -0.2
135,245 - 11397 mRNA_3029 0.15 -1.2
135,392 + 11397 mRNA_3029 0.22 -2.2
135,514 + 11397 mRNA_3029 0.28 -0.5