Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_2962

Experiments: Sorted High BODIPY Gate

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_2961: 11329 - ProSitePatterns-Zn(2)-C6 fungal-type DNA-binding domain signature.-PS00463,ProSiteProfiles-Zn(2)-C6 fungal-type DNA-binding domain profile.-PS50048,SMART-GAL4-like Zn(II)2Cys6 (or C6 zinc) binuclear cluster DNA-binding domain-SM00066,SUPERFAMILY--SSF57701, at 654993 to 657914 11329 mRNA_2962: 11330 - KOG3841 TEF-1 and related transcription factor, TEAD family, at 658359 to 659860 11330 mRNA_2963: 11331 - K01647 CS, gltA citrate synthase, at 660416 to 662957 11331

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Per-strain Table

Position Strand Gene Sysname Fraction Sorted High BODIPY Gate
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657,402 - 11329 mRNA_2961 0.82 0.3
657,470 - 11329 mRNA_2961 0.85 -0.8
657,599 + 11329 mRNA_2961 0.89 0.5
657,740 - -1.3
657,876 + -1.1
657,889 + 0.1
657,890 + -0.8
658,044 + -0.0
658,120 + -0.1
658,129 - 1.7
658,174 - -1.2
658,175 + -0.7
658,193 - 0.2
658,294 + -1.9
658,297 - -0.8
658,344 - 0.9
658,506 - 1.2
658,513 - 11330 mRNA_2962 0.10 -0.0
658,587 - 11330 mRNA_2962 0.15 0.1
658,595 + 11330 mRNA_2962 0.16 -0.1
658,645 + 11330 mRNA_2962 0.19 0.0
658,791 - 11330 mRNA_2962 0.29 0.3
658,886 + 11330 mRNA_2962 0.35 0.7
658,940 - 11330 mRNA_2962 0.39 0.2
659,072 - 11330 mRNA_2962 0.47 -0.1
659,084 - 11330 mRNA_2962 0.48 1.2
659,206 - 11330 mRNA_2962 0.56 -0.7
659,958 + -0.0
660,064 + 1.7
660,068 - 0.1
660,102 - 0.3
660,210 - 0.7