Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_2193

Experiments: Sorted High BODIPY Gate

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_2192: 10560 - HMMPfam-Fungal Zn(2)-Cys(6) binuclear cluster domain-PF00172,ProSitePatterns-Zn(2)-C6 fungal-type DNA-binding domain signature.-PS00463,ProSiteProfiles-Zn(2)-C6 fungal-type DNA-binding domain profile.-PS50048,SMART-GAL4-like Zn(II)2Cys6 (or C6 zinc) binuclear cluster DNA-binding domain-SM00066,SUPERFAMILY--SSF57701, at 306918 to 310071 10560 mRNA_2193: 10561 - HMMPfam-Alpha/beta hydrolase family-PF12697,SUPERFAMILY--SSF53474, at 310220 to 312834 10561 mRNA_2194: 10562 - BLAST ER to Golgi transport-related protein, putative [Cryp..., at 313322 to 318107 10562

Please try another browser if this message remains

Per-strain Table

Position Strand Gene Sysname Fraction Sorted High BODIPY Gate
remove
309,284 + 10560 mRNA_2192 0.75 -0.9
309,722 + 10560 mRNA_2192 0.89 0.0
309,752 + 10560 mRNA_2192 0.90 -0.2
309,856 - -3.1
309,903 + -0.5
310,050 + 0.6
310,157 - 0.4
310,358 + 0.8
310,371 + 1.2
310,733 + 10561 mRNA_2193 0.20 0.8
311,101 - 10561 mRNA_2193 0.34 0.4
311,166 + 10561 mRNA_2193 0.36 -0.4
311,406 + 10561 mRNA_2193 0.45 -2.8
311,427 - 10561 mRNA_2193 0.46 -0.4
312,054 - 10561 mRNA_2193 0.70 0.4
312,469 - 10561 mRNA_2193 0.86 0.1
312,482 + 10561 mRNA_2193 0.87 -0.3
312,584 - 1.0
312,626 + 0.4
312,631 + 0.5
312,724 - -1.0
312,759 - -0.2
312,787 - 0.6
312,918 + -0.8
312,919 - -0.5
312,919 - -0.0
312,925 + -2.3
312,925 - 0.7
312,933 + -2.4
312,933 + -1.6
312,935 - -0.6
312,936 + -1.4
312,938 - 0.4
312,938 - 0.2
312,940 + -0.3
312,945 + 1.3
312,945 + -0.9
312,945 + -3.3
312,947 + -0.9
312,951 + -0.5
312,955 - 0.9
312,960 - -0.0
312,961 + 0.3
312,961 + 1.6
312,965 + 0.1
312,969 - -1.3
312,971 + -1.5
312,975 - 0.8
312,987 - 0.6
312,988 - 1.3
312,988 + -1.4
312,989 + -1.6
312,996 + -0.6
312,997 - 2.2
313,019 + 1.4
313,099 - -2.0
313,112 + -2.0
313,113 + -2.1
313,122 + -2.4
313,133 + -0.8
313,199 - -0.3
313,201 - 0.4
313,203 + -3.1
313,206 - -0.6
313,349 - 0.7
313,508 - 0.3
313,515 + -1.0
313,516 - -1.0
313,697 + 0.8