Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_1655

Experiments: Sorted High BODIPY Gate

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_1655: 10023 - HMMPfam-PQ loop repeat-PF04193,SMART-Repeated motif present between transmembrane helices in cystinosin, yeast ERS1p, mannose-P-dolichol utilization defect 1, and other hypothetical proteins.-SM00679, at 819421 to 820962 10023 mRNA_1656: 10024 - HMMPfam-Universal stress protein family-PF00582,PRINTS-Universal stress protein signature-PR01438,SUPERFAMILY--SSF52402, at 821084 to 822700 10024

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Per-strain Table

Position Strand Gene Sysname Fraction Sorted High BODIPY Gate
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818,515 + -1.4
818,519 + -0.5
818,550 + 0.5
818,645 - -1.3
818,812 - -0.4
818,820 + -0.1
818,824 + -1.0
819,076 - -1.4
819,090 + 0.6
819,108 + 0.4
819,232 - 1.0
819,250 + -1.0
819,253 - -0.6
819,254 - -0.3
819,263 - -0.3
819,385 + -2.1
819,397 - 0.1
819,408 - -0.7
819,419 + 1.1
819,686 - 10023 mRNA_1655 0.17 -1.8
819,734 + 10023 mRNA_1655 0.20 -0.9
819,866 - 10023 mRNA_1655 0.29 -2.2
820,282 + 10023 mRNA_1655 0.56 -0.7
820,577 - 10023 mRNA_1655 0.75 0.6
820,706 - 10023 mRNA_1655 0.83 0.5
820,713 + 10023 mRNA_1655 0.84 -0.3
820,718 - 10023 mRNA_1655 0.84 -0.1
820,720 - 10023 mRNA_1655 0.84 0.4
820,861 - 1.2
820,862 + 0.4
821,020 + -2.0
821,031 + -1.0
821,036 + -0.4
821,038 - -0.2
821,040 + 0.5
821,047 + -0.9
821,191 - -0.2