Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_1272

Experiments: Sorted Low BODIPY Gate

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_1271: 9639 - K05349 bglX beta-glucosidase, at 803420 to 806888 9639 mRNA_1272: 9640 - HMMPfam-Fungal Zn(2)-Cys(6) binuclear cluster domain-PF00172,ProSitePatterns-Zn(2)-C6 fungal-type DNA-binding domain signature.-PS00463,ProSiteProfiles-Zn(2)-C6 fungal-type DNA-binding domain profile.-PS50048,SMART-GAL4-like Zn(II)2Cys6 (or C6 zinc) binuclear cluster DNA-binding domain-SM00066,SUPERFAMILY--SSF57701, at 807645 to 808575 9640 mRNA_1273: 9641 - BLAST priB [Histoplasma capsulatum H143], at 808747 to 810374 9641

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Per-strain Table

Position Strand Gene Sysname Fraction Sorted Low BODIPY Gate
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806,674 + -1.8
806,676 - 1.1
806,830 + -0.9
807,271 + 0.5
807,273 - 0.1
807,294 - -2.4
807,296 - 0.2
807,300 + 0.6
807,300 + 1.1
807,388 + -0.0
807,399 + -0.0
807,412 - -1.8
807,425 + 0.2
807,545 - -3.1
807,663 + -0.0
807,706 - -0.2
807,714 - 0.8
807,864 + 9640 mRNA_1272 0.24 0.3
807,870 + 9640 mRNA_1272 0.24 -0.1
807,997 + 9640 mRNA_1272 0.38 2.6
808,140 - 9640 mRNA_1272 0.53 -0.9
808,400 - 9640 mRNA_1272 0.81 -2.3
808,400 - 9640 mRNA_1272 0.81 0.6
808,476 - 9640 mRNA_1272 0.89 -2.4
808,566 - -0.5
808,910 + 9641 mRNA_1273 0.10 -2.1
809,289 - 9641 mRNA_1273 0.33 -2.7
809,369 + 9641 mRNA_1273 0.38 -2.1
809,488 - 9641 mRNA_1273 0.46 0.8
809,571 - 9641 mRNA_1273 0.51 0.4