Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_1270

Experiments: Sorted Low BODIPY Gate

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_1269: 9637 - K15628 PXA ATP-binding cassette, subfamily D (ALD), peroxisomal long-chain fatty acid import protein, at 796569 to 799890 9637 mRNA_1270: 9638 - KOG0254 Predicted transporter (major facilitator superfamily), at 800593 to 802936 9638 mRNA_1271: 9639 - K05349 bglX beta-glucosidase, at 803420 to 806888 9639

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Per-strain Table

Position Strand Gene Sysname Fraction Sorted Low BODIPY Gate
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799,623 - 0.2
799,635 - 1.0
799,778 - -0.2
799,917 + 0.5
799,946 + 1.8
799,974 - -0.6
800,046 - 0.1
800,083 - 0.6
800,125 - 1.2
800,198 - -0.5
800,220 - 1.0
800,240 - 0.1
800,242 + -0.3
800,245 + -0.2
800,246 - -0.7
800,247 + -2.9
800,366 + -1.2
800,508 - -0.4
800,516 + -1.1
800,593 - -0.9
800,637 - 0.5
800,652 - 0.7
800,694 - -2.2
800,711 - -0.8
800,721 + -0.2
800,961 + 9638 mRNA_1270 0.16 -0.1
801,332 + 9638 mRNA_1270 0.32 -2.1
801,398 + 9638 mRNA_1270 0.34 -1.7
801,401 + 9638 mRNA_1270 0.34 -1.7
801,411 - 9638 mRNA_1270 0.35 -0.1
801,669 - 9638 mRNA_1270 0.46 0.3
801,784 + 9638 mRNA_1270 0.51 1.6
801,854 - 9638 mRNA_1270 0.54 0.6
802,273 + 9638 mRNA_1270 0.72 1.0
802,283 + 9638 mRNA_1270 0.72 0.4
802,423 + 9638 mRNA_1270 0.78 1.2
802,994 + -1.2
803,005 + 1.5
803,020 + -0.8
803,137 - -0.9
803,141 + -1.3
803,158 + -1.2
803,183 - -1.1
803,199 - -1.6
803,296 + -1.3
803,302 + 0.0
803,311 - -0.1
803,333 + 0.7
803,456 - 0.2
803,463 + 0.6
803,464 - 0.3
803,465 - 0.0
803,623 - -0.3
803,787 + 9639 mRNA_1271 0.11 2.4
803,864 + 9639 mRNA_1271 0.13 0.5
803,894 - 9639 mRNA_1271 0.14 1.4