Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_1223

Experiments: Sorted Low BODIPY Gate

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_1222: 9590 - BLAST proteophosphoglycan ppg4 [Moniliophthora roreri M..., at 682421 to 686506 9590 mRNA_1223: 9591 - PRINTS-Proline rich extensin signature-PR01217, at 687384 to 689890 9591 mRNA_1224: 9592 - BLAST catalytic [Ascochyta rabiei], at 690092 to 691295 9592

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Per-strain Table

Position Strand Gene Sysname Fraction Sorted Low BODIPY Gate
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686,610 - 0.4
686,681 - -1.0
686,734 + -0.1
686,767 + -0.4
686,790 + -0.2
686,826 - -2.2
686,843 - -0.7
686,880 - -1.2
686,885 - 1.4
686,887 - 2.2
686,889 + -0.2
686,900 + -0.3
686,917 + -0.7
686,923 + -0.5
686,954 + 1.3
686,964 - 0.6
686,988 - 0.5
686,988 - 0.2
687,015 - 0.1
687,018 + -1.7
687,029 + -0.6
687,033 + 0.1
687,043 - -0.1
687,046 + -2.3
687,052 + -1.3
687,061 + -0.8
687,064 - 0.2
687,186 - -0.2
687,192 - -0.6
687,214 + 0.8
687,363 + -1.3
687,497 + -0.4
687,639 + 9591 mRNA_1223 0.10 1.3
687,767 + 9591 mRNA_1223 0.15 -0.7
688,125 + 9591 mRNA_1223 0.30 -1.3
688,156 - 9591 mRNA_1223 0.31 0.3
688,341 + 9591 mRNA_1223 0.38 -0.5
688,501 + 9591 mRNA_1223 0.45 -0.3
688,908 - 9591 mRNA_1223 0.61 0.3
689,086 + 9591 mRNA_1223 0.68 0.8
689,807 + 0.4
689,863 - 0.3
689,959 + -0.7
689,968 + -0.3
689,968 - -0.2
689,972 + 0.1
690,032 + 0.8
690,045 + -2.1
690,189 + -0.3
690,304 + 9592 mRNA_1224 0.18 -0.3
690,320 + 9592 mRNA_1224 0.19 1.5
690,324 + 9592 mRNA_1224 0.19 -0.1
690,457 + 9592 mRNA_1224 0.30 -0.7
690,466 - 9592 mRNA_1224 0.31 -1.4
690,594 - 9592 mRNA_1224 0.42 0.6
690,760 - 9592 mRNA_1224 0.55 0.8