Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_1183

Experiments: Sorted Low BODIPY Gate

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_1182: 9550 - K12816 CDC40, PRP17 pre-mRNA-processing factor 17, at 593740 to 596442 9550 mRNA_1183: 9551 - KOG2533 Permease of the major facilitator superfamily, at 596710 to 598781 9551 mRNA_1184: 9552 - KOG0143 Iron/ascorbate family oxidoreductases, at 599340 to 600971 9552

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Per-strain Table

Position Strand Gene Sysname Fraction Sorted Low BODIPY Gate
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596,527 - -0.0
596,543 - -0.5
596,559 + -1.4
596,559 + 0.3
596,578 - 1.7
596,579 - 0.5
596,596 + -0.7
596,885 - -0.1
596,903 + -0.6
596,904 + 0.6
597,192 - 9551 mRNA_1183 0.23 -1.1
597,228 - 9551 mRNA_1183 0.25 -1.9
597,318 - 9551 mRNA_1183 0.29 -1.9
597,387 - 9551 mRNA_1183 0.33 0.0
597,411 + 9551 mRNA_1183 0.34 -1.4
597,431 - 9551 mRNA_1183 0.35 -3.3
597,655 - 9551 mRNA_1183 0.46 0.6
597,676 + 9551 mRNA_1183 0.47 0.4
597,682 + 9551 mRNA_1183 0.47 -0.5
598,060 + 9551 mRNA_1183 0.65 -1.7
598,068 - 9551 mRNA_1183 0.66 -0.3
598,184 + 9551 mRNA_1183 0.71 0.5
598,284 - 9551 mRNA_1183 0.76 -0.5
598,381 + 9551 mRNA_1183 0.81 0.2
598,422 + 9551 mRNA_1183 0.83 -2.7
598,658 - 0.1
598,663 + -0.5
598,679 - 0.2
598,705 + -2.4
598,802 - -1.1
598,831 + -0.6
598,963 - -0.0
598,965 - -1.2
598,969 - 0.0
598,970 + -1.0
598,978 + 0.7
598,983 + -1.1
598,985 + -0.9
599,000 - -0.5
599,002 - -0.6
599,004 - 2.9
599,012 + -0.8
599,149 - -0.3
599,181 + -0.5
599,295 + 0.2
599,298 - 0.2
599,299 - 1.9
599,314 + -1.9
599,410 + -2.4
599,455 - -1.1