Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_972

Experiments: Sorted Low BODIPY Gate

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_971: 9339 - KOG2262 Sexual differentiation process protein ISP4, at 104337 to 107412 9339 mRNA_972: 9340 - Hypothetical Protein, at 107840 to 108806 9340 mRNA_973: 9341 - KOG4648 Uncharacterized conserved protein, contains LRR repeats, at 109023 to 112852 9341

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Per-strain Table

Position Strand Gene Sysname Fraction Sorted Low BODIPY Gate
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106,892 + 9339 mRNA_971 0.83 -0.7
107,017 + 9339 mRNA_971 0.87 -0.5
107,023 - 9339 mRNA_971 0.87 -0.1
107,031 + 9339 mRNA_971 0.88 0.3
107,040 + 9339 mRNA_971 0.88 1.4
107,122 + -2.9
107,184 - 0.3
107,213 + 0.5
107,218 - -0.2
107,233 + 1.1
107,266 + 1.6
107,327 - 1.0
107,340 - 0.9
107,345 + 1.6
107,352 + 1.2
107,363 - -0.1
107,370 + 0.1
107,430 + -0.2
107,461 - -1.4
107,464 - 0.6
107,471 + -3.5
107,483 - 1.1
107,488 - 1.4
107,490 + -1.5
107,491 - 0.9
107,499 - -1.3
107,499 - 0.7
107,499 - 0.2
107,500 + 0.6
107,508 - 2.2
107,509 + 0.5
107,515 + -2.0
107,515 - -0.4
107,519 - 0.8
107,522 - -0.1
107,523 + 0.0
107,524 + 0.6
107,526 + -0.2
107,535 + -2.7
107,537 + 0.2
107,540 - 1.9
107,548 + -0.3
107,548 - 1.6
107,554 + -0.5
107,559 - 0.7
107,560 + 1.1
107,560 - -0.4
107,567 + 0.9
107,571 - -0.4
107,576 - 1.6
107,577 + 1.0
107,581 - 1.0
107,585 - 1.3
107,585 - 0.3
107,585 + 0.3
107,585 + 0.6
107,586 + 1.8
107,640 + -0.1
107,645 - -1.4
107,653 + -0.4
107,674 - 0.6
107,683 - 1.4
107,687 - 0.5
107,690 - -0.2
107,691 + -0.3
107,693 - 0.5
107,693 - -0.1
107,698 + -0.3
107,700 - 0.3
107,712 + -3.8
107,713 - 0.8
107,714 - 1.0
107,717 - -0.2
107,719 - 1.0
107,720 - -0.4
107,721 - 1.6
107,729 + 0.1
107,730 - 0.0
107,731 + 0.4
107,738 + 1.5
107,739 + -2.7
107,739 + 2.0
107,756 - -0.7
107,763 + 0.1
107,799 + 1.5
107,804 + -0.5
107,804 - 0.5
107,808 + 1.3
107,816 - 0.2
107,838 - 0.4
107,838 - -2.1
107,853 + 2.1
107,865 + -0.2
107,866 + 0.5
107,866 + 0.2
107,882 - -1.2
107,883 - -0.2
107,891 - 0.9
107,895 - 0.1
107,896 + 0.2
107,897 - 1.0
107,898 + -1.1
107,898 + 0.3
107,907 - -0.2
107,909 - 0.9
107,909 - -0.1
107,910 + -0.4
107,910 + -1.3
107,913 + -0.1
107,914 - 1.8
107,914 - -2.5
107,921 + 0.5
107,923 - -0.4
107,928 + 0.2
107,929 - -0.7
107,933 - 0.1
107,943 + 9340 mRNA_972 0.11 -0.3
107,948 - 9340 mRNA_972 0.11 0.5
107,951 - 9340 mRNA_972 0.11 -1.6
107,954 + 9340 mRNA_972 0.12 1.2
107,958 - 9340 mRNA_972 0.12 -0.2
107,962 + 9340 mRNA_972 0.13 0.3
107,966 + 9340 mRNA_972 0.13 0.4
107,978 + 9340 mRNA_972 0.14 -0.2
107,980 - 9340 mRNA_972 0.14 -1.0
108,046 + 9340 mRNA_972 0.21 -0.4
108,065 + 9340 mRNA_972 0.23 -0.1
108,071 - 9340 mRNA_972 0.24 0.4
108,084 + 9340 mRNA_972 0.25 -0.7
108,089 + 9340 mRNA_972 0.26 1.0
108,099 - 9340 mRNA_972 0.27 1.2
108,114 + 9340 mRNA_972 0.28 0.7
108,117 - 9340 mRNA_972 0.29 1.2
108,127 - 9340 mRNA_972 0.30 -0.2
108,128 - 9340 mRNA_972 0.30 -0.0
108,131 + 9340 mRNA_972 0.30 0.3
108,131 + 9340 mRNA_972 0.30 -0.8
108,139 - 9340 mRNA_972 0.31 0.6
108,145 + 9340 mRNA_972 0.32 0.1
108,147 - 9340 mRNA_972 0.32 0.2
108,166 + 9340 mRNA_972 0.34 -1.8
108,169 + 9340 mRNA_972 0.34 -0.5
108,192 - 9340 mRNA_972 0.36 0.2
108,197 + 9340 mRNA_972 0.37 0.1
108,215 + 9340 mRNA_972 0.39 0.1
108,220 + 9340 mRNA_972 0.39 -0.2
108,228 - 9340 mRNA_972 0.40 1.1
108,231 - 9340 mRNA_972 0.40 -1.3
108,233 - 9340 mRNA_972 0.41 0.5
108,233 + 9340 mRNA_972 0.41 1.6
108,234 - 9340 mRNA_972 0.41 -0.9
108,247 - 9340 mRNA_972 0.42 -1.1
108,248 + 9340 mRNA_972 0.42 -1.5
108,250 + 9340 mRNA_972 0.42 0.6
108,252 - 9340 mRNA_972 0.43 -1.5
108,254 + 9340 mRNA_972 0.43 -0.1
108,257 - 9340 mRNA_972 0.43 0.2
108,259 + 9340 mRNA_972 0.43 0.6
108,261 - 9340 mRNA_972 0.44 1.0
108,265 - 9340 mRNA_972 0.44 0.5
108,266 + 9340 mRNA_972 0.44 -0.4
108,270 - 9340 mRNA_972 0.44 1.7
108,270 - 9340 mRNA_972 0.44 1.7
108,271 + 9340 mRNA_972 0.45 0.8
108,271 + 9340 mRNA_972 0.45 0.2
108,273 - 9340 mRNA_972 0.45 -0.6
108,286 - 9340 mRNA_972 0.46 0.3
108,293 - 9340 mRNA_972 0.47 -0.6
108,297 - 9340 mRNA_972 0.47 0.3
108,298 - 9340 mRNA_972 0.47 0.6
108,298 + 9340 mRNA_972 0.47 0.0
108,298 + 9340 mRNA_972 0.47 0.8
108,304 - 9340 mRNA_972 0.48 -0.1
108,314 - 9340 mRNA_972 0.49 2.8
108,328 + 9340 mRNA_972 0.50 0.8
108,338 + 9340 mRNA_972 0.51 0.1
108,357 + 9340 mRNA_972 0.53 0.6
108,378 + 9340 mRNA_972 0.56 0.2
108,378 - 9340 mRNA_972 0.56 -2.5
108,390 + 9340 mRNA_972 0.57 2.1
108,398 - 9340 mRNA_972 0.58 0.5
108,399 - 9340 mRNA_972 0.58 1.0
108,400 - 9340 mRNA_972 0.58 -2.2
108,409 + 9340 mRNA_972 0.59 0.4
108,424 + 9340 mRNA_972 0.60 -0.3
108,433 + 9340 mRNA_972 0.61 0.3
108,455 + 9340 mRNA_972 0.64 1.1
108,460 + 9340 mRNA_972 0.64 0.3
108,461 + 9340 mRNA_972 0.64 -1.1
108,462 - 9340 mRNA_972 0.64 -0.6
108,472 + 9340 mRNA_972 0.65 0.4
108,474 + 9340 mRNA_972 0.66 -0.9
108,496 - 9340 mRNA_972 0.68 -0.4
108,497 + 9340 mRNA_972 0.68 1.1
108,502 + 9340 mRNA_972 0.68 -0.0
108,503 + 9340 mRNA_972 0.69 -0.2
108,504 + 9340 mRNA_972 0.69 -0.5
108,505 + 9340 mRNA_972 0.69 -2.8
108,506 + 9340 mRNA_972 0.69 -0.4
108,507 - 9340 mRNA_972 0.69 0.9
108,516 + 9340 mRNA_972 0.70 0.6
108,524 - 9340 mRNA_972 0.71 1.7
108,534 - 9340 mRNA_972 0.72 -1.0
108,535 - 9340 mRNA_972 0.72 1.2
108,536 - 9340 mRNA_972 0.72 1.3
108,542 + 9340 mRNA_972 0.73 -0.2
108,545 - 9340 mRNA_972 0.73 2.1
108,546 - 9340 mRNA_972 0.73 2.0
108,547 + 9340 mRNA_972 0.73 -1.6
108,554 - 9340 mRNA_972 0.74 -1.5
108,555 + 9340 mRNA_972 0.74 -2.2
108,558 + 9340 mRNA_972 0.74 -0.3
108,559 + 9340 mRNA_972 0.74 0.0
108,588 + 9340 mRNA_972 0.77 0.6
108,597 - 9340 mRNA_972 0.78 0.1
108,626 + 9340 mRNA_972 0.81 0.6
108,647 + 9340 mRNA_972 0.83 2.0
108,651 - 9340 mRNA_972 0.84 -0.5
108,666 + 9340 mRNA_972 0.85 -0.1
108,762 + 2.5
108,772 + -1.0
108,772 + 0.3
108,783 + 0.4
108,789 - -2.5
108,794 - 0.1
108,796 + 0.1
108,801 + -2.0
108,802 + 1.1
108,803 + -1.0
108,807 + -0.4
108,807 + -2.5
108,808 + 0.9
108,816 - 2.3
108,818 + 0.7
108,830 - 0.7
108,836 - -1.3
108,930 - 0.7
108,940 + -0.8
108,947 - -1.2
108,972 - -0.5
108,988 + 0.9
109,059 + -1.5
109,094 - 0.1
109,098 + 1.0
109,100 - -1.4
109,238 + -0.1
109,682 - 9341 mRNA_973 0.17 -2.8