Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_534

Experiments: Sorted Low BODIPY Gate

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_533: 8901 - K17759 AIBP, nnrE NAD(P)H-hydrate epimerase, at 1268591 to 1269786 8901 mRNA_534: 8902 - K08054 CANX calnexin, at 1270222 to 1272470 8902 mRNA_535: 8903 - HMMPfam-Ribosomal protein S21-PF01165,TIGRFAM-S21p ribosomal protein S21-TIGR00030, at 1272701 to 1273396 8903

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Per-strain Table

Position Strand Gene Sysname Fraction Sorted Low BODIPY Gate
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1,269,223 - 8901 mRNA_533 0.53 -1.8
1,269,245 - 8901 mRNA_533 0.55 1.2
1,269,409 + 8901 mRNA_533 0.68 -0.9
1,269,653 - 8901 mRNA_533 0.89 1.6
1,269,662 + 8901 mRNA_533 0.90 -0.3
1,269,674 + 0.7
1,269,797 - -0.4
1,269,805 - 0.5
1,269,806 - 0.5
1,269,925 - 0.1
1,269,946 - -1.5
1,270,081 - -1.0
1,270,090 - -0.4
1,270,111 - 0.2
1,270,113 - 0.6
1,270,154 + 0.1
1,270,158 - 0.3
1,270,158 - -0.1
1,270,162 - 0.1
1,270,163 + -1.0
1,270,164 - -0.1
1,270,166 + 0.0
1,270,171 - 1.4
1,270,171 - 1.3
1,270,176 - 0.5
1,270,177 + -0.0
1,270,178 - 0.7
1,270,182 - -1.2
1,270,186 + -0.7
1,270,188 + 0.4
1,270,296 + 0.2
1,270,310 - 0.2
1,270,315 - -0.2
1,270,326 - -0.3
1,270,330 - 0.5
1,270,338 - -1.7
1,270,384 + -0.7
1,270,458 - 8902 mRNA_534 0.10 0.7
1,270,491 + 8902 mRNA_534 0.12 -2.5
1,270,495 + 8902 mRNA_534 0.12 -1.0
1,270,500 + 8902 mRNA_534 0.12 -0.1
1,270,623 + 8902 mRNA_534 0.18 -2.7
1,270,624 - 8902 mRNA_534 0.18 0.0
1,270,630 + 8902 mRNA_534 0.18 -0.0
1,270,631 + 8902 mRNA_534 0.18 -0.4
1,270,760 + 8902 mRNA_534 0.24 -0.1
1,270,895 + 8902 mRNA_534 0.30 -0.1
1,270,910 - 8902 mRNA_534 0.31 -0.8
1,271,080 + 8902 mRNA_534 0.38 -0.2
1,271,207 + 8902 mRNA_534 0.44 0.1
1,271,222 - 8902 mRNA_534 0.44 0.9
1,271,351 - 8902 mRNA_534 0.50 0.8
1,271,505 + 8902 mRNA_534 0.57 -0.8
1,271,523 + 8902 mRNA_534 0.58 -0.2
1,272,228 + 8902 mRNA_534 0.89 -1.7
1,272,293 - 0.7
1,272,344 + -0.2
1,272,695 - 1.2