Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_98

Experiments: Sorted Low BODIPY Gate

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_97: 8465 - KOG2234 Predicted UDP-galactose transporter, at 229785 to 233167 8465 mRNA_98: 8466 - Hypothetical Protein, at 233874 to 234659 8466 mRNA_99: 8467 - HMMPfam-Fungal cellulose binding domain-PF00734,HMMPfam-GlcNAc-PI de-N-acetylase-PF02585,ProSitePatterns-CBM1 (carbohydrate binding type-1) domain signature.-PS00562,ProSiteProfiles-Coagulation factors 5/8 type C domain (FA58C) profile.-PS50022,ProSiteProfiles-CBM1 (carbohydrate binding type-1) domain profile.-PS51164,SMART-Fungal-type cellulose-binding domain-SM00236,SUPERFAMILY--SSF102588,SUPERFAMILY--SSF49785,SUPERFAMILY--SSF57180, at 235594 to 240654 8467

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Per-strain Table

Position Strand Gene Sysname Fraction Sorted Low BODIPY Gate
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232,980 + -3.3
232,995 - 1.0
233,157 - 0.2
233,237 + 2.8
233,256 - -1.3
233,256 - -1.6
233,263 - -0.9
233,276 + -2.9
233,282 - -0.4
233,290 + 0.2
233,290 + 0.9
233,290 + -0.2
233,298 - -0.4
233,298 + 2.1
233,298 - 0.2
233,301 + 0.0
233,301 - -1.4
233,301 - -0.7
233,302 + -0.5
233,315 + -1.5
233,316 - 0.2
233,316 + 0.0
233,317 - 0.1
233,317 - -0.0
233,319 - -0.2
233,320 - -2.8
233,321 + -0.4
233,321 - 0.2
233,321 - -0.1
233,323 - -0.4
233,323 - 1.3
233,324 + -0.3
233,324 + -0.1
233,325 + -0.4
233,325 - -0.8
233,326 + -1.3
233,329 + -0.1
233,332 + -0.5
233,335 + -1.0
233,336 + -0.0
233,337 + 0.9
233,337 + 0.7
233,350 + -2.6
233,350 + -2.2
233,354 - 0.5
233,359 + 0.1
233,365 - 0.3
233,365 - -0.8
233,365 + 0.8
233,375 - 0.5
233,379 + -0.1
233,383 + 0.2
233,387 - -0.1
233,404 + -1.9
233,404 + -0.0
233,408 - -0.8
233,436 - -0.0
233,436 - 0.1
233,436 - 0.3
233,437 - -0.9
233,441 + 2.2
233,442 - -1.3
233,443 - -1.3
233,444 + 0.5
233,446 - -0.8
233,448 - -0.7
233,450 + -0.9
233,451 + -0.3
233,452 + 0.0
233,459 - 0.4
233,488 - -0.0
233,491 - -0.5
233,507 + -1.2
233,512 - -0.6
233,518 - -0.7
233,520 - 0.0
233,523 + -0.2
233,529 - 0.9
233,539 - -0.3
233,541 + -1.8
233,549 + -1.4
233,551 + 0.2
233,559 - -0.7
233,560 + -0.2
233,568 + 2.1
233,571 - -0.2
233,573 + 0.8
233,613 + -0.3
233,657 - -0.9
233,706 + -0.5
233,726 + -0.1
233,851 - 0.7
233,852 + -0.7
233,859 - 0.4
233,865 + -0.2
234,006 - 8466 mRNA_98 0.17 -1.5
234,139 - 8466 mRNA_98 0.34 -0.0
234,284 - 8466 mRNA_98 0.52 -1.7
234,293 + 8466 mRNA_98 0.53 -3.6
234,459 + 8466 mRNA_98 0.74 -0.2
234,600 + -1.2
234,613 + 2.0
234,733 - -0.2
234,750 + -0.9
234,765 + -0.3
234,773 - -1.4
234,904 - -1.0
234,909 + -0.6
234,911 - 0.7
234,914 + -1.9
234,915 - -0.4
234,919 + -0.6
234,920 + -0.7
234,923 - -1.9
234,926 + -1.4
234,926 + -2.7
234,927 - 0.2
234,932 - -0.6
234,935 + -1.8
234,936 + -1.4
234,940 - 0.6
234,941 + 1.3
234,941 + -1.2
234,942 + 0.4
234,943 + -0.8
234,970 - -0.1
234,984 - -2.0
234,985 + -0.2
234,991 - 1.5
234,999 + 0.5
234,999 + -0.8
235,005 + -0.3
235,007 - -0.6
235,011 - 0.3
235,013 + -0.4
235,016 - 0.7
235,016 - -0.7
235,019 - 0.9
235,019 + 0.4
235,024 + 0.2
235,026 - 1.0
235,040 - -0.3
235,041 + 0.3
235,048 - -2.2
235,057 - 0.1
235,061 - -2.6
235,062 - -1.9
235,072 - -1.9
235,077 + -0.0
235,078 - -2.6
235,080 - -1.7
235,080 - 0.3
235,081 + 0.1
235,081 + 2.0
235,085 - -1.1
235,085 - -0.3
235,089 - -0.0
235,091 + 0.6
235,092 - -1.1
235,096 + -0.9
235,104 + -0.8
235,135 - -1.1
235,141 - -1.0
235,141 - -0.9
235,144 - -0.0
235,146 + -1.2
235,147 + 1.3
235,147 - 1.2
235,148 - -0.9
235,150 - 0.5
235,152 - -0.1
235,152 + -0.4
235,160 + 0.3
235,165 - -1.9
235,183 + 0.8
235,195 - -1.6
235,206 - -0.1
235,211 + 0.6
235,211 + -0.6
235,212 + 0.2
235,259 - 0.9
235,260 - -1.9
235,276 - -1.8
235,277 - 0.0
235,279 - -3.8
235,280 + -0.1
235,280 - -1.1
235,281 + -1.0
235,281 + -0.0
235,290 - -0.5
235,291 - -0.3
235,292 + -0.5
235,293 - -0.6
235,297 - -2.7
235,299 - 0.9
235,301 - -0.8
235,302 + 0.1
235,308 - -0.8
235,308 + -4.3
235,311 - -1.3
235,314 - 1.0
235,470 + -1.2
235,486 - -0.3
235,495 + 0.8
235,616 - -1.7