Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_36

Experiments: Sorted Low BODIPY Gate

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_35: 8403 - KOG1611 Predicted short chain-type dehydrogenase, at 84983 to 86013 8403 mRNA_36: 8404 - K00694 bcsA cellulose synthase (UDP-forming), at 86184 to 90147 8404 mRNA_37: 8405 - HMMPfam-Variant SH3 domain-PF14604,ProSiteProfiles-Src homology 3 (SH3) domain profile.-PS50002,SMART-Src homology 3 domains-SM00326,SUPERFAMILY--SSF50044, at 90908 to 93083 8405

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Per-strain Table

Position Strand Gene Sysname Fraction Sorted Low BODIPY Gate
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85,238 + 8403 mRNA_35 0.25 -0.6
85,339 - 8403 mRNA_35 0.35 -0.0
85,394 + 8403 mRNA_35 0.40 -2.2
85,502 + 8403 mRNA_35 0.50 1.7
85,520 + 8403 mRNA_35 0.52 1.0
85,661 - 8403 mRNA_35 0.66 0.6
85,670 + 8403 mRNA_35 0.67 -0.1
85,827 - 8403 mRNA_35 0.82 -1.8
85,833 + 8403 mRNA_35 0.82 -0.9
85,943 - -0.7
85,947 + 0.2
85,985 - 0.2
86,078 - -2.1
86,113 - 0.2
86,148 - -0.9
86,211 - -1.5
86,266 + 1.1
86,389 - 1.6
86,443 + -0.9
86,511 - 0.9
86,538 + -3.1
86,598 + 8404 mRNA_36 0.10 0.2
86,798 + 8404 mRNA_36 0.15 0.4
86,883 + 8404 mRNA_36 0.18 0.1
87,119 - 8404 mRNA_36 0.24 -1.2
87,663 + 8404 mRNA_36 0.37 -1.5
87,704 + 8404 mRNA_36 0.38 -0.7
87,753 - 8404 mRNA_36 0.40 -2.3
88,231 - 8404 mRNA_36 0.52 -0.2
88,320 + 8404 mRNA_36 0.54 -1.1
88,335 + 8404 mRNA_36 0.54 -0.6
88,374 + 8404 mRNA_36 0.55 -0.4
88,453 - 8404 mRNA_36 0.57 -1.2
88,465 + 8404 mRNA_36 0.58 -0.2
88,727 + 8404 mRNA_36 0.64 2.2
88,912 - 8404 mRNA_36 0.69 0.1
89,310 + 8404 mRNA_36 0.79 0.9
89,544 + 8404 mRNA_36 0.85 -0.6
89,642 + 8404 mRNA_36 0.87 -0.5
89,656 + 8404 mRNA_36 0.88 0.7
89,887 + -1.5
90,062 + -0.5
90,107 - 1.2
90,219 - 0.0
90,236 - -0.2
90,348 + 0.2
90,354 - -0.0
90,359 + 0.6
90,360 + -1.9
90,362 + -0.1
90,372 - -1.2
90,378 - -1.2
90,378 - 0.8
90,390 + -0.2
90,391 + -0.7
90,392 + 0.0
90,393 + -1.5
90,393 - 0.6
90,394 + 1.1
90,395 + 0.8
90,395 + -1.0
90,399 - -0.3
90,401 - -1.3
90,401 + -2.6
90,403 - -0.0
90,403 - 0.2
90,408 + 0.3
90,408 - -1.3
90,409 + -0.2
90,409 - 0.9
90,411 + 0.5
90,411 + -1.5
90,413 + -0.7
90,420 - 1.0
90,422 - -0.3
90,423 + 0.1
90,424 + -0.2
90,425 + 0.4
90,425 + -0.3
90,428 - -0.1
90,437 - -1.1
90,439 - 0.8
90,439 - -0.9
90,439 - 0.6
90,440 - 0.7
90,441 - 0.9
90,442 + -0.1
90,443 - -1.1
90,453 + -1.4
90,454 - -0.6
90,455 - -3.4
90,462 + -1.4
90,471 + -0.0
90,472 - 0.5
90,480 - -1.3
90,496 - 0.1
90,498 - -2.8
90,499 + 1.2
90,501 - 0.3
90,502 + 0.8
90,503 - -1.1
90,503 - -0.2
90,516 - -0.9
90,517 + 0.4
90,517 + -0.8
90,528 + -1.3
90,547 + 1.3
90,556 + 0.2
90,565 - -0.2
90,567 - -0.3
90,574 - 0.5
90,575 + -1.0
90,579 - -0.2
90,587 + -1.0
90,589 - 0.1
90,590 + -1.9
90,591 + -0.4
90,594 - -2.3
90,603 + 0.1
90,620 - -2.1
90,621 - -1.4
90,625 - -3.2
90,629 - -0.2
90,630 + -1.5
90,630 + -1.2
90,630 - 0.0
90,633 - 0.7
90,633 + -0.6
90,636 - 0.5
90,639 - -1.5
90,641 - -1.2
90,643 + -1.3
90,648 - -0.5
90,649 - -1.1
90,652 + -0.1
90,652 - -0.0
90,655 - 0.7
90,660 + -0.4
90,660 - -0.9
90,662 - -2.3
90,667 - 0.4
90,667 - -0.9
90,668 + -0.2
90,670 + 1.3
90,673 - 0.8
90,674 + -0.9
90,682 + 0.9
90,686 - 1.1
90,686 - 0.4
90,694 - -1.2
90,696 + -0.1
90,700 - 0.2
90,701 + -0.2
90,707 + -1.4
90,720 - 0.2
90,809 + 0.6
90,811 - 0.4
90,819 - 0.1
90,839 + -2.4
90,840 + -2.7
90,850 + -0.3
90,861 + -0.2
91,102 + -1.0
91,107 - -0.1
91,127 - 8405 mRNA_37 0.10 -1.3
91,128 + 8405 mRNA_37 0.10 -0.0