Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_8001

Experiments: Sorted Low BODIPY Gate

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_8000: 16368 - K08991 MUS81 crossover junction endonuclease MUS81, at 180086 to 183760 16368 mRNA_8001: 16369 - K01092 E3.1.3.25, IMPA, suhB myo-inositol-1(or 4)-monophosphatase, at 183994 to 185593 16369 mRNA_8002: 16370 - KOG0132 RNA polymerase II C-terminal domain-binding protein RA4, contains RPR and RRM domains, at 186103 to 188392 16370

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Per-strain Table

Position Strand Gene Sysname Fraction Sorted Low BODIPY Gate
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183,029 - 16368 mRNA_8000 0.80 -3.9
183,068 + 16368 mRNA_8000 0.81 -0.2
183,072 - 16368 mRNA_8000 0.81 -2.7
183,453 + -3.7
183,668 + -0.2
183,933 - -1.1
183,934 + -1.1
184,078 - -0.8
184,215 - 16369 mRNA_8001 0.14 -0.5
184,251 + 16369 mRNA_8001 0.16 1.7
184,256 - 16369 mRNA_8001 0.16 -1.3
184,389 - 16369 mRNA_8001 0.25 0.3
184,432 + 16369 mRNA_8001 0.27 1.2
184,522 + 16369 mRNA_8001 0.33 0.2
185,395 + 16369 mRNA_8001 0.88 2.2
185,425 - 16369 mRNA_8001 0.89 0.3
185,544 + -1.0
185,640 - -0.3
185,687 + -0.6
185,689 - 0.9
185,696 + -0.4
185,754 + 0.5
185,775 - 0.2
185,786 + -0.3
185,845 - -0.9
185,881 - 0.2
185,918 + 0.7
185,926 + -0.4
185,933 + -0.0
185,941 + 0.9
185,953 + 0.1
186,134 - -1.5
186,181 + 0.0
186,284 - -0.1
186,332 - 16370 mRNA_8002 0.10 0.4
186,396 - 16370 mRNA_8002 0.13 0.1
186,423 + 16370 mRNA_8002 0.14 1.0