Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_7962

Experiments: Sorted Low BODIPY Gate

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_7961: 16329 - HMMPfam-Ser-Thr-rich glycosyl-phosphatidyl-inositol-anchored membrane family-PF10342, at 104119 to 104997 16329 mRNA_7962: 16330 - K08967 mtnD, mtnZ, ADI1 1,2-dihydroxy-3-keto-5-methylthiopentene dioxygenase, at 105517 to 106511 16330 mRNA_7963: 16331 - HMMPfam-MYND finger-PF01753,SUPERFAMILY--SSF144232, at 106769 to 107651 16331

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Per-strain Table

Position Strand Gene Sysname Fraction Sorted Low BODIPY Gate
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104,537 + 16329 mRNA_7961 0.48 -0.3
104,710 + 16329 mRNA_7961 0.67 1.2
104,817 - 16329 mRNA_7961 0.79 -0.1
104,839 - 16329 mRNA_7961 0.82 -2.2
104,902 + 16329 mRNA_7961 0.89 -1.7
104,918 - 0.7
105,104 + 1.6
105,107 - -0.2
105,107 - 1.0
105,110 + 0.4
105,128 - 0.8
105,149 - -2.5
105,246 + -0.3
105,404 - -0.2
105,420 - 1.6
105,458 - -0.8
105,459 - -3.5
105,563 + -0.7
105,648 - 16330 mRNA_7962 0.13 -2.7
105,700 - 16330 mRNA_7962 0.18 -2.5
105,705 + 16330 mRNA_7962 0.19 -0.6
105,722 - 16330 mRNA_7962 0.21 -0.0
105,788 - 16330 mRNA_7962 0.27 -1.2
105,793 + 16330 mRNA_7962 0.28 1.0
105,964 + 16330 mRNA_7962 0.45 0.4
105,967 - 16330 mRNA_7962 0.45 -0.7
105,980 + 16330 mRNA_7962 0.47 -0.3
106,118 + 16330 mRNA_7962 0.60 -0.7
106,124 - 16330 mRNA_7962 0.61 0.3
106,160 + 16330 mRNA_7962 0.65 -1.8
106,166 - 16330 mRNA_7962 0.65 -0.5
106,279 + 16330 mRNA_7962 0.77 -0.5
106,282 - 16330 mRNA_7962 0.77 -1.6
106,564 + -2.1
106,567 - 0.4
106,574 + -0.4
106,576 - -0.1
106,610 + -0.1
106,660 + -0.2
106,767 + 0.4
106,769 - -1.5
106,862 - 16331 mRNA_7963 0.11 -0.4
107,061 + 16331 mRNA_7963 0.33 -1.2
107,263 + 16331 mRNA_7963 0.56 -0.9
107,420 + 16331 mRNA_7963 0.74 3.4
107,430 + 16331 mRNA_7963 0.75 -2.0
107,451 - 16331 mRNA_7963 0.77 -1.2
107,467 + 16331 mRNA_7963 0.79 0.1