Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_6676

Experiments: Sorted Low BODIPY Gate

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_6674: 15042 - HMMPfam-MYND finger-PF01753,ProSitePatterns-Zinc finger MYND-type signature.-PS01360,ProSiteProfiles-Zinc finger MYND-type profile.-PS50865,SUPERFAMILY--SSF144232, at 1418030 to 1419199 15042 mRNA_6675: 15043 - Hypothetical Protein, at 1419227 to 1419845 15043 mRNA_6676: 15044 - KOG3138 Predicted N-acetyltransferase, at 1419972 to 1420806 15044 mRNA_6677: 15045 - Hypothetical Protein, at 1421176 to 1421967 15045

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Per-strain Table

Position Strand Gene Sysname Fraction Sorted Low BODIPY Gate
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1,419,219 + 0.2
1,419,340 - 15043 mRNA_6675 0.18 -1.0
1,419,488 - 15043 mRNA_6675 0.42 2.2
1,419,507 + 15043 mRNA_6675 0.45 -0.1
1,419,527 - 15043 mRNA_6675 0.48 0.1
1,419,628 + 15043 mRNA_6675 0.65 0.0
1,419,629 + 15043 mRNA_6675 0.65 1.1
1,419,636 + 15043 mRNA_6675 0.66 0.1
1,419,646 + 15043 mRNA_6675 0.68 -0.7
1,419,647 + 15043 mRNA_6675 0.68 -0.1
1,419,648 + 15043 mRNA_6675 0.68 -0.9
1,419,654 - 15043 mRNA_6675 0.69 -1.6
1,419,659 + 15043 mRNA_6675 0.70 0.2
1,419,670 + 15043 mRNA_6675 0.72 0.4
1,419,778 - 15043 mRNA_6675 0.89 -0.3
1,419,780 + 15043 mRNA_6675 0.89 0.4
1,419,811 + -2.3
1,419,811 + 1.1
1,419,827 - 0.2
1,419,880 + -0.7
1,419,938 - -2.5
1,419,950 - 0.7
1,419,975 - -1.2
1,419,976 + -0.1
1,419,991 - -0.3
1,420,118 + 15044 mRNA_6676 0.17 -0.2
1,420,122 + 15044 mRNA_6676 0.18 0.3
1,420,699 + 15044 mRNA_6676 0.87 -3.0
1,420,750 - -0.1
1,420,760 - 1.2
1,420,809 - -1.7
1,420,813 + -0.7
1,420,849 + -0.4
1,420,870 - -0.3
1,420,893 - -1.2
1,420,893 + 0.5
1,420,912 + -0.0
1,420,964 + -0.2
1,420,966 - 2.2
1,420,977 + -0.9
1,420,999 - 0.7
1,421,000 - -0.3
1,421,006 + -1.1
1,421,007 + -2.1
1,421,011 + -1.2
1,421,015 - 1.8
1,421,020 - 0.7
1,421,023 + 0.7
1,421,024 + -0.1
1,421,032 + -0.3
1,421,038 - -0.7
1,421,174 + 1.4
1,421,185 + -0.9
1,421,189 + -3.4
1,421,207 + -0.6
1,421,294 - 15045 mRNA_6677 0.15 -0.5
1,421,331 - 15045 mRNA_6677 0.20 0.5
1,421,601 + 15045 mRNA_6677 0.54 -0.2