Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_6180

Experiments: Sorted Low BODIPY Gate

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_6179: 14547 - KOG2101 Intermediate filament-like protein, sorting nexins, and related proteins containing PX (PhoX) domain(s), at 187281 to 188756 14547 mRNA_6180: 14548 - KOG0218 Mismatch repair MSH3, at 188869 to 192529 14548 mRNA_6181: 14549 - K13126 PABPC polyadenylate-binding protein, at 192986 to 195356 14549

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Per-strain Table

Position Strand Gene Sysname Fraction Sorted Low BODIPY Gate
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188,291 + 14547 mRNA_6179 0.68 -3.8
188,455 + 14547 mRNA_6179 0.80 -1.1
189,007 + -0.0
189,126 + -2.1
189,406 - 14548 mRNA_6180 0.15 -1.7
189,478 - 14548 mRNA_6180 0.17 -0.6
189,585 + 14548 mRNA_6180 0.20 -1.2
190,042 + 14548 mRNA_6180 0.32 -1.9
190,631 + 14548 mRNA_6180 0.48 -1.6
190,787 + 14548 mRNA_6180 0.52 -2.9
190,798 + 14548 mRNA_6180 0.53 -1.8
190,905 - 14548 mRNA_6180 0.56 0.7
191,116 - 14548 mRNA_6180 0.61 -1.7
191,492 - 14548 mRNA_6180 0.72 -1.8
191,634 - 14548 mRNA_6180 0.76 -2.2
191,676 - 14548 mRNA_6180 0.77 -4.4
191,696 + 14548 mRNA_6180 0.77 -1.2
192,222 + -0.1
192,240 + -0.7
192,371 - -1.7
192,516 - -1.9
192,683 + 0.2
192,705 + -0.3
192,706 - -0.7
192,707 + -2.7
193,068 - -0.5