Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_5757

Experiments: Sorted Low BODIPY Gate

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_5756: 14124 - HMMPfam-Myb-like DNA-binding domain-PF00249,ProSiteProfiles-Myb-like domain profile.-PS50090,ProSiteProfiles-Myb-type HTH DNA-binding domain profile.-PS51294,SMART-SANT SWI3, ADA2, N-CoR and TFIIIB'' DNA-binding domains-SM00717,SUPERFAMILY--SSF46689, at 870782 to 872057 14124 mRNA_5757: 14125 - HMMPfam-Glycosyl hydrolase catalytic core-PF11790,SUPERFAMILY--SSF51445, at 872220 to 874136 14125 mRNA_5758: 14126 - K00627 DLAT, aceF, pdhC pyruvate dehydrogenase E2 component (dihydrolipoamide acetyltransferase), at 874421 to 875943 14126

Please try another browser if this message remains

Per-strain Table

Position Strand Gene Sysname Fraction Sorted Low BODIPY Gate
remove
871,486 - 14124 mRNA_5756 0.55 -2.3
871,612 + 14124 mRNA_5756 0.65 -0.8
871,774 - 14124 mRNA_5756 0.78 -0.7
871,908 - 14124 mRNA_5756 0.88 -1.6
872,034 - 0.9
872,074 + -1.9
872,718 - 14125 mRNA_5757 0.26 -0.2
872,720 - 14125 mRNA_5757 0.26 0.2
872,778 - 14125 mRNA_5757 0.29 -1.2
872,789 + 14125 mRNA_5757 0.30 0.4
872,905 + 14125 mRNA_5757 0.36 -3.2
873,196 - 14125 mRNA_5757 0.51 -1.9
873,245 + 14125 mRNA_5757 0.53 0.5
873,349 - 14125 mRNA_5757 0.59 0.4
873,516 + 14125 mRNA_5757 0.68 -0.7
873,646 + 14125 mRNA_5757 0.74 -0.1
873,683 + 14125 mRNA_5757 0.76 0.3
873,811 + 14125 mRNA_5757 0.83 0.8
874,102 - -0.1
874,215 - 0.4